Enhanced surveillance of HIV-1 drug resistance in recently infected MSM in the UK

Viral load criteria and threshold optimization to improve HIV incidence assay characteristics

(2016) Reshma Kassanjee et al.   AIDS

British HIV Association guidelines for the treatment of HIV-1-positive adults with antiretroviral therapy 2015

(2016) Duncan Churchill et al.   HIV MEDICINE

The increasing genetic diversity of HIV-1 in the UK, 2002–2010

(2016)   AIDS

Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data

(2015) Richard J Orton et al.   BMC GENOMICS

Evidence of Self-Sustaining Drug Resistant HIV-1 Lineages Among Untreated Patients in the United Kingdom

(2015) Jean L. Mbisa et al.   CLINICAL INFECTIOUS DISEASES

Transmission of HIV drug resistance

(2015) Anna Maria Geretti et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Recent infection testing algorithm (RITA) applied to new HIV diagnoses in England, Wales and Northern Ireland, 2009 to 2011

(2014) A Aghaizu et al.   Eurosurveillance

Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case–control study using centralized ultrasensitive 454 pyrosequencing

(2014) Alessandro Cozzi-Lepri et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

HIV Reverse-Transcriptase Drug Resistance Mutations During Early Infection Reveal Greater Transmission Diversity Than in Envelope Sequences

(2014) Jonathan T. Lipscomb et al.   JOURNAL OF INFECTIOUS DISEASES

COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification

(2014) Daniel Struck et al.   NUCLEIC ACIDS RESEARCH

Low-Frequency NNRTI-Resistant HIV-1 Variants and Relationship to Mutational Load in Antiretroviral-Naïve Subjects

(2014) Shaili Gupta et al.   Viruses-Basel

Clinical Implications of HIV-1 Minority Variants

(2013) Jonathan Z. Li et al.   CLINICAL INFECTIOUS DISEASES

Origin of Minority Drug-Resistant HIV-1 Variants in Primary HIV-1 Infection

(2013) Karin J. Metzner et al.   JOURNAL OF INFECTIOUS DISEASES

Persistence of HIV-1 Transmitted Drug Resistance Mutations

(2013) Hannah Castro et al.   JOURNAL OF INFECTIOUS DISEASES

HIV incidence in men who have sex with men in England and Wales 2001–10: a nationwide population study

(2013) Paul J Birrell et al.   LANCET INFECTIOUS DISEASES

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

(2012) John Archer et al.   BMC BIOINFORMATICS

Detection of Recent HIV-1 Infection Using a New Limiting-Antigen Avidity Assay: Potential for HIV-1 Incidence Estimates and Avidity Maturation Studies

(2012) Yen T. Duong et al.   PLoS One

Time trends in drug resistant HIV-1 infections in the United Kingdom up to 2009: multicentre observational study

(2012)   BMJ-British Medical Journal

Low-Frequency HIV-1 Drug Resistance Mutations and Risk of NNRTI-Based Antiretroviral Treatment Failure

(2011) Jonathan Z. Li   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Evolutionary pathways of transmitted drug-resistant HIV-1

(2011) M. Pingen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Differential Persistence of Transmitted HIV-1 Drug Resistance Mutation Classes

(2011) Vivek Jain et al.   JOURNAL OF INFECTIOUS DISEASES

Detection of Minority Resistance during Early HIV-1 Infection: Natural Variation and Spurious Detection rather than Transmission and Evolution of Multiple Viral Variants

(2011) S. Gianella et al.   JOURNAL OF VIROLOGY

Effect of transmitted drug resistance on virological and immunological response to initial combination antiretroviral therapy for HIV (EuroCoord-CHAIN joint project): a European multicohort study

(2011) Linda Wittkop et al.   LANCET INFECTIOUS DISEASES

New technology to detect low-level drug-resistant HIV variants

(2010) Arjet Gega et al.   Future Virology

Increased detection of the HIV-1 reverse transcriptase M184V mutation using mutation-specific minority assays in a UK surveillance study suggests evidence of unrecognized transmitted drug resistance*

(2010) AJ Buckton et al.   HIV MEDICINE

Prevalence and Clinical Significance of HIV Drug Resistance Mutations by Ultra-Deep Sequencing in Antiretroviral-Naïve Subjects in the CASTLE Study

(2010) Max Lataillade et al.   PLoS One

Transmission of Drug‐Resistant HIV‐1 Is Stabilizing in Europe

(2009) Jurgen Vercauteren et al.   JOURNAL OF INFECTIOUS DISEASES

Low-Abundance Drug-Resistant Viral Variants in Chronically HIV-Infected, Antiretroviral Treatment–Naive Patients Significantly Impact Treatment Outcomes

(2009) Birgitte B. Simen et al.   JOURNAL OF INFECTIOUS DISEASES

Demonstration of Sustained Drug-Resistant Human Immunodeficiency Virus Type 1 Lineages Circulating among Treatment-Naive Individuals

(2009) S. Hue et al.   JOURNAL OF VIROLOGY

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences

(2009) L. C. J. Alcantara et al.   NUCLEIC ACIDS RESEARCH

Drug Resistance Mutations for Surveillance of Transmitted HIV-1 Drug-Resistance: 2009 Update

(2009) Diane E. Bennett et al.   PLoS One

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1

(2009) Sergei L. Kosakovsky Pond et al.   PLoS Computational Biology

Persistence of Transmitted Drug Resistance among Subjects with Primary Human Immunodeficiency Virus Infection

(2008) S. J. Little et al.   JOURNAL OF VIROLOGY

Minority HIV-1 Drug Resistance Mutations Are Present in Antiretroviral Treatment–Naïve Populations and Associate with Reduced Treatment Efficacy

(2008) Jeffrey A Johnson et al.   PLOS MEDICINE