Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons

High‐resolution phenotyping of sorghum genotypic and phenotypic responses to low nitrogen and synthetic microbial communities

(2021) Yen Ning Chai et al.   PLANT CELL AND ENVIRONMENT

Molecular and physiological analysis of indole-3-acetic acid degradation in Bradyrhizobium japonicum E109

(2021) Daniela Torres et al.   RESEARCH IN MICROBIOLOGY

Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

(2020) Thorsten Thiergart et al.   Nature Ecology & Evolution

Root-Secreted Coumarins and the Microbiota Interact to Improve Iron Nutrition in Arabidopsis

(2020) Christopher J. Harbort et al.   Cell Host & Microbe

A single bacterial genus maintains root growth in a complex microbiome

(2020) Omri M. Finkel et al.   NATURE

Plant-microbe interactions before drought influence plant physiological responses to subsequent severe drought

(2019) Danielle E. M. Ulrich et al.   Scientific Reports

Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants

(2019) Imran Afzal et al.   MICROBIOLOGICAL RESEARCH

Three-dimensional Time-lapse Analysis Reveals Multiscale Relationships in Maize Root Systems with Contrasting Architectures

(2019) Ni Jiang et al.   PLANT CELL

Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

(2019) Mathias J. E. E. E. Voges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Genomotaxonomy View of the Bradyrhizobium Genus

(2019) Ernesto Ormeño-Orrillo et al.   Frontiers in Microbiology

Stay-Green Trait: A Prospective Approach for Yield Potential, and Drought and Heat Stress Adaptation in Globally Important Cereals

(2019) Kamal et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Does plant—Microbe interaction confer stress tolerance in plants: A review?

(2018) Akhilesh Kumar et al.   MICROBIOLOGICAL RESEARCH

Community structure and plant growth-promoting potential of cultivable bacteria isolated from Cameroon soil

(2018) Gylaine Vanissa Tchuisseu Tchakounté et al.   MICROBIOLOGICAL RESEARCH

Pseudomonas syringae: what it takes to be a pathogen

(2018) Xiu-Fang Xin et al.   NATURE REVIEWS MICROBIOLOGY

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Design of synthetic bacterial communities for predictable plant phenotypes

(2018) Sur Herrera Paredes et al.   PLOS BIOLOGY

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

(2018) Collin M. Timm et al.   mSystems

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments

(2018) Morgan R. McPherson et al.   Jove-Journal of Visualized Experiments

An automated, high-throughput method for standardizing image color profiles to improve image-based plant phenotyping

(2018) Jeffrey C. Berry et al.   PeerJ

Shared and host-specific microbiome diversity and functioning of grapevine and accompanying weed plants

(2017) Abdul Samad et al.   ENVIRONMENTAL MICROBIOLOGY

Noviherbaspirillum denitrificans sp. nov., a denitrifying bacterium isolated from rice paddy soil and Noviherbaspirillum autotrophicum sp. nov., a denitrifying, facultatively autotrophic bacterium isolated from rice paddy soil and proposal to reclassify Herbaspirillum massiliense as Noviherbaspirillum massiliense comb. nov.

(2017) Satoshi Ishii et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Pseudomonas putida T6SS is a plant warden against phytopathogens

(2017) Patricia Bernal et al.   ISME Journal

Drought and host selection influence bacterial community dynamics in the grass root microbiome

(2017) Dan Naylor et al.   ISME Journal

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes

(2017) Christian Santos-Medellín et al.   mBio

Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE

(2016) Alessandra Fracasso et al.   BMC PLANT BIOLOGY

Current knowledge and perspectives of Paenibacillus: a review

(2016) Elliot Nicholas Grady et al.   Microbial Cell Factories

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Accessing inoculation methods of maize and wheat with Azospirillum brasilense

(2016) Josiane Fukami et al.   AMB Express

Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes – a genome comparison

(2016) Frances Patricia Jones et al.   Scientific Reports

Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

(2015) Noah Fahlgren et al.   CURRENT OPINION IN PLANT BIOLOGY

Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soils

(2015) David VanInsberghe et al.   ISME Journal

DOMAINS REARRANGED METHYLTRANSFERASE3 controls DNA methylation and regulates RNA polymerase V transcript abundance inArabidopsis

(2015) Xuehua Zhong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait

(2014) Eleonora Rolli et al.   ENVIRONMENTAL MICROBIOLOGY

Root microbiome relates to plant host evolution in maize and other Poaceae

(2014) Marie-Lara Bouffaud et al.   ENVIRONMENTAL MICROBIOLOGY

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

21st century agriculture: integration of plant microbiomes for improved crop production and food security

(2014) Angela Sessitsch et al.   Microbial Biotechnology

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Water-Limiting Conditions Alter the Structure and Biofilm-Forming Ability of Bacterial Multispecies Communities in the Alfalfa Rhizosphere

(2013) Pablo Bogino et al.   PLoS One

Isolation and Characterization of Beneficial Bacteria Associated with Citrus Roots in Florida

(2011) Pankaj Trivedi et al.   MICROBIAL ECOLOGY

Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales

(2010) Fabiola M Carvalho et al.   BMC MICROBIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors

(2009) M. Buée et al.   PLANT AND SOIL

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY