Integrated Degradome and Srna Sequencing Revealed miRNA-mRNA Regulatory Networks between the Phloem and Developing Xylem of Poplar

sRNAanno—a database repository of uniformly annotated small RNAs in plants

(2021) Chengjie Chen et al.   Horticulture Research

Uncovering miRNA-mRNA Regulatory Modules in Developing Xylem of Pinus massoniana via Small RNA and Degradome Sequencing

(2021) Tengfei Shen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome-wide identification and characterization of microRNAs in diverse phases of wood formation in Populus trichocarpa

(2021) Ruiqi Wang et al.   G3-Genes Genomes Genetics

High-Throughput Sequencing Reveals the Regulatory Networks of Transcriptome and Small RNAs During the Defense Against Marssonina brunnea in Poplar

(2021) Yangwenke Liao et al.   Frontiers in Plant Science

Identification of Small RNAs During High Light Acclimation in Arabidopsis thaliana

(2021) Bhavika Tiwari et al.   Frontiers in Plant Science

SERRATE interacts with the nuclear exosome targeting (NEXT) complex to degrade primary miRNA precursors in Arabidopsis

(2020) Mateusz Bajczyk et al.   NUCLEIC ACIDS RESEARCH

Hyponastic Leaves 1 protects pri-miRNAs from nuclear exosome attack

(2020) Shuai Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and the potential involvement of miRNAs in the regulation of artemisinin biosynthesis in A. annua

(2020) Shazia Khan et al.   Scientific Reports

MAC5, an RNA-binding protein, protects pri-miRNAs from SERRATE-dependent exoribonuclease activities

(2020) Shengjun Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing

(2020) Damian A. Cambiagno et al.   Molecular Plant

Phase separation in plant miRNA processing

(2020) Seung Cho Lee et al.   NATURE CELL BIOLOGY

Phase separation of SERRATE drives dicing body assembly and promotes miRNA processing in Arabidopsis

(2020) Dongqi Xie et al.   NATURE CELL BIOLOGY

An Overview of Sucrose Synthases in Plants

(2019) Ofer Stein et al.   Frontiers in Plant Science

The PROTEIN PHOSPHATASE4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis

(2019) Suikang Wang et al.   PLANT CELL

MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions

(2019) Xianwei Song et al.   Annual Review of Plant Biology

OUP accepted manuscript

(2018)   BIOINFORMATICS

Identification and characterization of long non-coding RNAs involved in the formation and development of poplar adventitious roots

(2018) Sian Liu et al.   INDUSTRIAL CROPS AND PRODUCTS

Lignins: Biosynthesis and Biological Functions in Plants

(2018) Qingquan Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MicroRNA528 Affects Lodging Resistance of Maize by Regulating Lignin Biosynthesis under Nitrogen-Luxury Conditions

(2018) Qing Sun et al.   Molecular Plant

SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis

(2018) Shengjun Li et al.   NUCLEIC ACIDS RESEARCH

PbrmiR397a regulates lignification during stone cell development in pear fruit

(2018) Cheng Xue et al.   PLANT BIOTECHNOLOGY JOURNAL

Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data

(2018) Michael J. Axtell et al.   PLANT CELL

Redox control of miRNAs and their targets in wheat

(2018) Jie Cao et al.   JOURNAL OF EXPERIMENTAL BOTANY

SWI2/SNF2 ATPase CHR2 remodels pri-miRNAs via Serrate to impede miRNA production

(2018) Zhiye Wang et al.   NATURE

MicroRNA-transcription factor interactions and their combined effect on target gene expression in colon cancer cases

(2017) Lila E. Mullany et al.   GENES CHROMOSOMES & CANCER

The ‘how’ and ‘where’ of plant microRNAs

(2017) Yu Yu et al.   NEW PHYTOLOGIST

Cellulose synthase complex organization and cellulose microfibril structure

(2017) Simon Turner et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

microRNA-dependent gene regulatory networks in maize leaf senescence

(2016) Xiangyuan Wu et al.   BMC PLANT BIOLOGY

Noncoding RNA: Current Deep Sequencing Data Analysis Approaches and Challenges

(2016) Dario Veneziano et al.   HUMAN MUTATION

DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data

(2016) Junko Tsuji et al.   PLoS One

Identification of microRNAs Involved in Regeneration of the Secondary Vascular System in Populus tomentosa Carr

(2016) Fang Tang et al.   Frontiers in Plant Science

Plant MYB Transcription Factors: Their Role in Drought Response Mechanisms

(2015) Elena Baldoni et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Plant vascular development: from early specification to differentiation

(2015) Bert De Rybel et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Micro-RNA172c-APETALA2-1 Node as a Key Regulator of the Common Bean-Rhizobium etliNitrogen Fixation Symbiosis

(2015) Bárbara Nova-Franco et al.   PLANT PHYSIOLOGY

The Cell Biology of Cellulose Synthesis

(2014) Heather E. McFarlane et al.   Annual Review of Plant Biology

Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton

(2014) Fuliang Xie et al.   JOURNAL OF EXPERIMENTAL BOTANY

MiR397b regulates both lignin content and seed number in Arabidopsis via modulating a laccase involved in lignin biosynthesis

(2014) Cong-Ying Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Evolutionary history of plant microRNAs

(2014) Richard S. Taylor et al.   TRENDS IN PLANT SCIENCE

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

The target gene of tae-miR164, a novel NAC transcription factor from the NAM subfamily, negatively regulates resistance of wheat to stripe rust

(2013) Hao Feng et al.   MOLECULAR PLANT PATHOLOGY

miR172 Regulates Soybean Nodulation

(2013) Zhe Yan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep Annotation of Populus trichocarpa microRNAs from Diverse Tissue Sets

(2012) Joshua R. Puzey et al.   PLoS One

miR165/166 and the development of land plants

(2011) Jun Sakaguchi et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

The role of Mediator in small and long noncoding RNA production inArabidopsis thaliana

(2011) Yun Ju Kim et al.   EMBO JOURNAL

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Hemicelluloses

(2010) Henrik Vibe Scheller et al.   Annual Review of Plant Biology

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A Protracted and Dynamic Maturation Schedule Underlies Arabidopsis Leaf Development

(2008) I. Efroni et al.   PLANT CELL

The Structure of Sucrose Phosphate Synthase from Halothermothrix orenii Reveals Its Mechanism of Action and Binding Mode

(2008) T. K. Chua et al.   PLANT CELL