Mechanistic behavior and subtle key events during DNA clamp opening and closing in T4 bacteriophage

Allosteric communication in DNA polymerase clamp loaders relies on a critical hydrogen-bonded junction

(2021) Subu Subramanian et al.   eLife

Explicit-solvent molecular dynamics simulations revealed conformational regain and aggregation inhibition of I113T SOD1 by Himalayan bioactive molecules

(2021) Sachin Kumar et al.   JOURNAL OF MOLECULAR LIQUIDS

A new insight into protein-protein interactions and the effect of conformational alterations in PCNA

(2020) Vijay Kumar Bhardwaj et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation

(2018) Huan-Xiang Zhou et al.   CHEMICAL REVIEWS

Dynamics of Open DNA Sliding Clamps

(2016) Aaron J. Oakley   PLoS One

Coordinated DNA Replication by the Bacteriophage T4 Replisome

(2015) Erin Noble et al.   Viruses-Basel

g_mmpbsa—A GROMACS Tool for High-Throughput MM-PBSA Calculations

(2014) Rashmi Kumari et al.   Journal of Chemical Information and Modeling

Use of Long Term Molecular Dynamics Simulation in Predicting Cancer Associated SNPs

(2014) Ambuj Kumar et al.   PLoS Computational Biology

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Role of ELA region in auto-activation of mutant KIT receptor: a molecular dynamics simulation insight

(2013) Rituraj Purohit   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Replication Clamps and Clamp Loaders

(2013) M. Hedglin et al.   Cold Spring Harbor Perspectives in Biology

How a DNA Polymerase Clamp Loader Opens a Sliding Clamp

(2011) B. A. Kelch et al.   SCIENCE

Recognition of the Ring-Opened State of Proliferating Cell Nuclear Antigen by Replication Factor C Promotes Eukaryotic Clamp-Loading

(2010) John A. Tainer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Elucidating the Inhibition Mechanism of HIV-1 Non-Nucleoside Reverse Transcriptase Inhibitors through Multicopy Molecular Dynamics Simulations

(2009) Anthony Ivetac et al.   JOURNAL OF MOLECULAR BIOLOGY