The clinical application of metagenomic next-generation sequencing for detecting pathogens in bronchoalveolar lavage fluid: case reports and literature review

Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota

(2021) Francesco Durazzi et al.   Scientific Reports

First Co-morbidity of Lophomonas blattarum and COVID-19 Infections: Confirmed Using Molecular Approach

(2021) Maryam Nakhaei et al.   ACTA PARASITOLOGICA

The application of metagenomic next-generation sequencing in diagnosing Chlamydia psittaci pneumonia: a report of five cases

(2020) Lei Gu et al.   BMC Pulmonary Medicine

Pulmonary Infection with Lophomonas blattarum

(2020) Qin Ding et al.   INDIAN JOURNAL OF PEDIATRICS

An update on COVID-19 pandemic: the epidemiology, pathogenesis, prevention and treatment strategies

(2020) Hin Fung Tsang et al.   Expert Review of Anti-Infective Therapy

Metagenomic next-generation sequencing identified Histoplasma capsulatum in the lung and epiglottis of a Chinese patient: A case report

(2020) Jiehua Chen et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles

(2019) Maria T. Nelson et al.   Cell Reports

Clinical metagenomics

(2019) Charles Y. Chiu et al.   NATURE REVIEWS GENETICS

The applications of big data in molecular diagnostics

(2019) Yin Kwan Evelyn Wong et al.   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

(2019) Jethro S. Johnson et al.   Nature Communications

Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection

(2018) Wei Gu et al.   Annual Review of Pathology-Mechanisms of Disease

Neurological Complications in Young Infants With Acute Bacterial Meningitis

(2018) Mei-Hsin Hsu et al.   Frontiers in Neurology

Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems

(2017) Joanne B. Emerson et al.   Microbiome

The human microbiome: an emerging tool in forensics

(2017) Jarrad T. Hampton-Marcell et al.   Microbial Biotechnology

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

(2016) Ravi Ranjan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Lophomonas blattarum Infection or Just the Movement of Ciliated Epithelial Cells?

(2016) Zhan-Cheng Gao et al.   CHINESE MEDICAL JOURNAL

Predicting active tuberculosis progression by RNA analysis

(2016) Michael Levin et al.   LANCET

A blood RNA signature for tuberculosis disease risk: a prospective cohort study

(2016) Daniel E Zak et al.   LANCET

Next-generation sequencing diagnostics of bacteremia in septic patients

(2016) Silke Grumaz et al.   Genome Medicine

The healthy human microbiome

(2016) Jason Lloyd-Price et al.   Genome Medicine

Bacterial Meningitis in Infants

(2015) Lawrence C. Ku et al.   CLINICS IN PERINATOLOGY

Metagenomic Approach for Identification of the Pathogens Associated with Diarrhea in Stool Specimens

(2015) Yanjiao Zhou et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED

(2015) James Kaminski et al.   PLoS Computational Biology

The Value and Significance of Metagenomics of Marine Environments

(2015) Fangqing Zhao et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing

(2014) Michael R. Wilson et al.   NEW ENGLAND JOURNAL OF MEDICINE

Viral pathogen discovery

(2013) Charles Y Chiu   CURRENT OPINION IN MICROBIOLOGY

Lophomonas blattarum and bronchopulmonary disease

(2013) R. Martinez-Giron et al.   JOURNAL OF MEDICAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS