Extreme mitochondrial DNA divergence underlies genetic conflict over sex determination

Extensive variation in nucleotide substitution rate and gene/intron loss in mitochondrial genomes of Pelargonium

(2020) KyoungSu Choi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Selfish Mitonuclear Conflict

(2019) Justin C. Havird et al.   CURRENT BIOLOGY

Phylogeography and genetics of the globally invasive snail Physa acuta Draparnaud 1805, and its potential to serve as an intermediate host to larval digenetic trematodes

(2018) Erika T. Ebbs et al.   BMC EVOLUTIONARY BIOLOGY

The Highly Divergent Mitochondrial Genomes Indicate That the Booklouse, Liposcelis bostrychophila (Psocoptera: Liposcelididae) Is a Cryptic Species

(2018) Shiqian Feng et al.   G3-Genes Genomes Genetics

Asymmetric evolutionary responses to sex-specific selection in a hermaphrodite

(2018) Nicolás Bonel et al.   EVOLUTION

Genetics and Genomics of an Unusual Selfish Sex Ratio Distortion in an Insect

(2018) Phineas T. Hamilton et al.   CURRENT BIOLOGY

Extreme Mitogenomic Variation in Natural Populations of Chaetognaths

(2017) Ferdinand Marlétaz et al.   Genome Biology and Evolution

Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition

(2017) Laurent Guéguen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reduced mate availability leads to evolution of self-fertilization and purging of inbreeding depression in a hermaphrodite

(2016) Elsa Noël et al.   EVOLUTION

Widespread transmission of independent cancer lineages within multiple bivalve species

(2016) Michael J. Metzger et al.   NATURE

A mitochondrial DNA hypomorph of cytochrome oxidase specifically impairs male fertility in Drosophila melanogaster

(2016) Maulik R Patel et al.   eLife

Deeply divergent sympatric mitochondrial lineages of the earthworm Lumbricus rubellus are not reproductively isolated

(2015) Iwona Giska et al.   BMC EVOLUTIONARY BIOLOGY

Molecular Evolution of Freshwater Snails with Contrasting Mating Systems

(2015) Concetta Burgarella et al.   MOLECULAR BIOLOGY AND EVOLUTION

Maternal transmission, sex ratio distortion, and mitochondria

(2015) Steve J. Perlman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Red Queen in mitochondria: cyto-nuclear co-evolution, hybrid breakdown and human disease

(2015) Jui-Yu Chou et al.   Frontiers in Genetics

Endosymbiotic theory for organelle origins

(2014) Verena Zimorski et al.   CURRENT OPINION IN MICROBIOLOGY

Physella acuta: atypical mitochondrial gene order among panpulmonates (Gastropoda)

(2014) Journey R. Nolan et al.   JOURNAL OF MOLLUSCAN STUDIES

Cytoplasmic male sterility and mitochondrial metabolism in plants

(2014) Pascal Touzet et al.   MITOCHONDRION

Bio++: Efficient Extensible Libraries and Tools for Computational Molecular Evolution

(2013) Laurent Guéguen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

THE ROLE OF ANDRODIOECY AND GYNODIOECY IN MEDIATING EVOLUTIONARY TRANSITIONS BETWEEN DIOECY AND HERMAPHRODITISM IN THE ANIMALIA

(2012) Stephen C. Weeks   EVOLUTION

Biparental Inheritance Through Uniparental Transmission: The Doubly Uniparental Inheritance (DUI) of Mitochondrial DNA

(2012) Eleftherios Zouros   Evolutionary Biology

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Intraspecific variation in mitochondrial genome sequence, structure, and gene content inSilene vulgaris, an angiosperm with pervasive cytoplasmic male sterility

(2012) Daniel B. Sloan et al.   NEW PHYTOLOGIST

Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates

(2012) Daniel B. Sloan et al.   PLOS BIOLOGY

How much better are females? The occurrence of female advantage, its proximal causes and its variation within and among gynodioecious species

(2011) Mathilde Dufay et al.   ANNALS OF BOTANY

Ultra-fast sequence clustering from similarity networks with SiLiX

(2011) Vincent Miele et al.   BMC BIOINFORMATICS

The intriguing evolutionary dynamics of plant mitochondrial DNA

(2011) Nicolas Galtier   BMC BIOLOGY

SEXUAL SELECTION WITHOUT SEXUAL DIMORPHISM: BATEMAN GRADIENTS IN A SIMULTANEOUS HERMAPHRODITE

(2011) Benjamin Pélissié et al.   EVOLUTION

Structural and Content Diversity of Mitochondrial Genome in Beet: A Comparative Genomic Analysis

(2011) A. Darracq et al.   Genome Biology and Evolution

Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics

(2011) Mónica Medina et al.   Marine Genomics

Phylogenetic relationships and evolution of pulmonate gastropods (Mollusca): New insights from increased taxon sampling

(2011) Benoît Dayrat et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Rapid Evolution of the Mitochondrial Genome in Chalcidoid Wasps (Hymenoptera: Chalcidoidea) Driven by Parasitic Lifestyles

(2011) Jin-Hua Xiao et al.   PLoS One

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

(2011) S. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental Evidence Supports a Sex-Specific Selective Sieve in Mitochondrial Genome Evolution

(2011) P. Innocenti et al.   SCIENCE

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Darwin's legacy: the forms, function and sexual diversity of flowers

(2010) S. C. H. Barrett   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

CORRELATED EVOLUTION OF MATING STRATEGY AND INBREEDING DEPRESSION WITHIN AND AMONG POPULATIONS OF THE HERMAPHRODITIC SNAILPHYSA ACUTA

(2009) Juan S. Escobar et al.   EVOLUTION

TESTS OF SEX ALLOCATION THEORY IN SIMULTANEOUSLY HERMAPHRODITIC ANIMALS

(2009) Lukas Schärer   EVOLUTION

The Different Sources of Variation in Inbreeding Depression, Heterosis and Outbreeding Depression in a Metapopulation of Physa acuta

(2008) Juan Sebastián Escobar et al.   GENETICS