Mixing genome annotation methods in a comparative analysis inflates the apparent number of lineage-specific genes
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Mixing genome annotation methods in a comparative analysis inflates the apparent number of lineage-specific genes
Authors
Keywords
lineage-specific genes, orphan genes, taxonomically restricted genes, novel genes, genome annotation
Journal
CURRENT BIOLOGY
Volume -, Issue -, Pages -
Publisher
Elsevier BV
Online
2022-05-18
DOI
10.1016/j.cub.2022.04.085
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Universal and taxon-specific trends in protein sequences as a function of age
- (2021) Jennifer E James et al. eLife
- Only a single taxonomically restricted gene family in the Drosophila melanogaster subgroup can be identified with high confidence
- (2020) Karina Zile et al. Genome Biology and Evolution
- FlyBase: updates to the Drosophila melanogaster knowledge base
- (2020) Aoife Larkin et al. NUCLEIC ACIDS RESEARCH
- A Shift in Aggregation Avoidance Strategy Marks a Long-Term Direction to Protein Evolution
- (2019) Scott G. Foy et al. GENETICS
- De novo gene birth
- (2019) Stephen Branden Van Oss et al. PLoS Genetics
- Gene Birth Contributes to Structural Disorder Encoded by Overlapping Genes
- (2018) Sara Willis et al. GENETICS
- Gene Birth Contributes to Structural Disorder Encoded by Overlapping Genes
- (2018) Sara Willis et al. GENETICS
- A Molecular Portrait of De Novo Genes in Yeasts
- (2017) Nikolaos Vakirlis et al. MOLECULAR BIOLOGY AND EVOLUTION
- Young genes are highly disordered as predicted by the preadaptation hypothesis of de novo gene birth
- (2017) Benjamin A. Wilson et al. Nature Ecology & Evolution
- P8008 The NCBI Eukaryotic Genome Annotation Pipeline
- (2016) F. Thibaud-Nissen et al. JOURNAL OF ANIMAL SCIENCE
- Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution
- (2016) Bryan A. Moyers et al. MOLECULAR BIOLOGY AND EVOLUTION
- Open questions in the study of de novo genes: what, how and why
- (2016) Aoife McLysaght et al. NATURE REVIEWS GENETICS
- New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation
- (2015) Aoife McLysaght et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases
- (2014) Gloria I. Giraldo-Calderón et al. NUCLEIC ACIDS RESEARCH
- Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
- (2013) Rafik Neme et al. BMC GENOMICS
- Proto-genes and de novo gene birth
- (2012) Anne-Ruxandra Carvunis et al. NATURE
- A beginner's guide to eukaryotic genome annotation
- (2012) Mark Yandell et al. NATURE REVIEWS GENETICS
- The evolutionary origin of orphan genes
- (2011) Diethard Tautz et al. NATURE REVIEWS GENETICS
- More than just orphans: are taxonomically-restricted genes important in evolution?
- (2009) Konstantin Khalturin et al. TRENDS IN GENETICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started