35B5 antibody potently neutralizes SARS-CoV-2 Omicron by disrupting the N-glycan switch via a conserved spike epitope

SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses

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Omicron escapes the majority of existing SARS-CoV-2 neutralizing antibodies

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Antibody-mediated broad sarbecovirus neutralization through ACE2 molecular mimicry

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Robust SARS-CoV-2 infection in nasal turbinates after treatment with systemic neutralizing antibodies

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Potent SARS-CoV-2 Neutralizing Antibodies Directed Against Spike N-Terminal Domain Target a Single Supersite

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Structure, Dynamics, Receptor Binding, and Antibody Binding of the Fully Glycosylated Full-Length SARS-CoV-2 Spike Protein in a Viral Membrane

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SARS-CoV-2 evolution and vaccines: cause for concern?

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Glycosylation is a key in SARS-CoV-2 infection

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Structural and functional ramifications of antigenic drift in recent SARS-CoV-2 variants

(2021) Meng Yuan et al.   SCIENCE

SARS-CoV-2 Spike Mutations, L452R, T478K, E484Q and P681R, in the Second Wave of COVID-19 in Maharashtra, India

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The Omicron variant is highly resistant against antibody-mediated neutralization: Implications for control of the COVID-19 pandemic

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Track Omicron’s spread with molecular data

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Structural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2

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Structural basis of receptor recognition by SARS-CoV-2

(2020) Jian Shang et al.   NATURE

Site-specific glycan analysis of the SARS-CoV-2 spike

(2020) Yasunori Watanabe et al.   SCIENCE

The Impact of Mutations in SARS-CoV-2 Spike on Viral Infectivity and Antigenicity

(2020) Qianqian Li et al.   CELL

ChAdOx1 nCoV-19 vaccine prevents SARS-CoV-2 pneumonia in rhesus macaques

(2020) Neeltje van Doremalen et al.   NATURE

A neutralizing human antibody binds to the N-terminal domain of the Spike protein of SARS-CoV-2

(2020) Xiangyang Chi et al.   SCIENCE

SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies

(2020) Christopher O. Barnes et al.   NATURE

Analysis of the SARS-CoV-2 spike protein glycan shield reveals implications for immune recognition

(2020) Oliver C. Grant et al.   Scientific Reports

Beyond Shielding: The Roles of Glycans in the SARS-CoV-2 Spike Protein

(2020) Lorenzo Casalino et al.   ACS Central Science

Impact of glycan cloud on the B-cell epitope prediction of SARS-CoV-2 Spike protein

(2020) René Wintjens et al.   npj Vaccines

Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine

(2020) Lindsey R. Baden et al.   NEW ENGLAND JOURNAL OF MEDICINE

Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine

(2020) Fernando P. Polack et al.   NEW ENGLAND JOURNAL OF MEDICINE

D614G Mutation Alters SARS-CoV-2 Spike Conformation and Enhances Protease Cleavage at the S1/S2 Junction

(2020) Sophie M.-C. Gobeil et al.   Cell Reports

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(2017) Shawn Q Zheng et al.   NATURE METHODS

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(2017) Ali Punjani et al.   NATURE METHODS

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

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Features and development ofCoot

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