High-throughput sequencing analysis reveals genomic similarity in phenotypic heterogeneous Photorhabdus luminescens cell populations

Two novel XRE-like transcriptional regulators control phenotypic heterogeneity in Photorhabdus luminescens cell populations

(2021) Simone Eckstein et al.   BMC MICROBIOLOGY

The biocontrol agent and insect pathogen Photorhabdus luminescens interacts with plant roots

(2020) Alice Regaiolo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of Phenotypic Switching and Heterogeneity in Photorhabdus luminescens Cell Populations

(2019) Simone Eckstein et al.   JOURNAL OF MOLECULAR BIOLOGY

Phenotypic Heterogeneity of the Insect Pathogen Photorhabdus luminescens: Insights into the Fate of Secondary Cells

(2019) Simone Eckstein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Whole-genome-based revisit of Photorhabdus phylogeny: proposal for the elevation of most Photorhabdus subspecies to the species level and description of one novel species Photorhabdus bodei sp. nov., and one novel subspecies Photorhabdus laumondii subsp. clarkei subsp. nov.

(2018) Ricardo A. R. Machado et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phenotypic and genomic comparison of Photorhabdus luminescens subsp. laumondii TT01 and a widely used rifampicin-resistant Photorhabdus luminescens laboratory strain

(2018) Maria-Antonia Zamora-Lagos et al.   BMC GENOMICS

HexA is a versatile regulator involved in the control of phenotypic heterogeneity of Photorhabdus luminescens

(2017) Angela Langer et al.   PLoS One

Defining heterogeneity within bacterial populations via single cell approaches

(2016) Kimberly M. Davis et al.   BIOESSAYS

Phenotypic Heterogeneity, a Phenomenon That May Explain Why Quorum Sensing Does Not Always Result in Truly Homogenous Cell Behavior

(2015) Jessica Grote et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

(2015) Konstantin Okonechnikov et al.   BIOINFORMATICS

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Summarizing and correcting the GC content bias in high-throughput sequencing

(2012) Yuval Benjamini et al.   NUCLEIC ACIDS RESEARCH

Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages

(2011) David Bikard et al.   CURRENT OPINION IN IMMUNOLOGY

Phase variation: how to create and coordinate population diversity

(2011) Marjan W van der Woude   CURRENT OPINION IN MICROBIOLOGY

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

(2011) Daniel Aird et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Individuality in Bacteria

(2008) Carla J. Davidson et al.   Annual Review of Genetics

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

(2008) J. C. Dohm et al.   NUCLEIC ACIDS RESEARCH