Heat‐responsive microRNAs and phased small interfering RNAs in reproductive development of flax

Conserved and non‐conserved triggers of 24‐nucleotide reproductive phasiRNAs in eudicots

(2021) Suresh Pokhrel et al.   PLANT JOURNAL

Pre-meiotic 21-nucleotide reproductive phasiRNAs emerged in seed plants and diversified in flowering plants

(2021) Suresh Pokhrel et al.   Nature Communications

High night-time temperature during flowering and pod filling affects flower opening, yield and seed fatty acid composition in canola

(2020) Meghnath Pokharel et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize

(2020) Chong Teng et al.   Nature Communications

miRNAs involved in transcriptome remodeling during pollen development and heat stress response in Solanum lycopersicum

(2020) Mario Keller et al.   Scientific Reports

24-nt reproductive phasiRNAs are broadly present in angiosperms

(2019) Rui Xia et al.   Nature Communications

Genome-Wide Transcript and Small RNA Profiling Reveals Transcriptomic Responses to Heat Stress

(2019) Juan He et al.   PLANT PHYSIOLOGY

Next-Generation Sequence Databases: RNA and Genomic Informatics Resources for Plants

(2019) Mayumi Nakano et al.   PLANT PHYSIOLOGY

Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data

(2018) Michael J. Axtell et al.   PLANT CELL

Chromosome-scale pseudomolecules refined by optical, physical and genetic maps in flax

(2018) Frank M. You et al.   PLANT JOURNAL

MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis

(2018) Jeng-Shane Lin et al.   Frontiers in Plant Science

Tissue-Specific Transcriptomics Reveals an Important Role of the Unfolded Protein Response in Maintaining Fertility upon Heat Stress in Arabidopsis

(2017) Shuang-Shuang Zhang et al.   PLANT CELL

Temperature increase reduces global yields of major crops in four independent estimates

(2017) Chuang Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and characterization of miRNAs and targets in flax (Linum usitatissimum) under saline, alkaline, and saline-alkaline stresses

(2016) Ying Yu et al.   BMC PLANT BIOLOGY

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

(2016) Yourong Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved Placement of Multi-mapping Small RNAs

(2016) Nathan R. Johnson et al.   G3-Genes Genomes Genetics

Identification, Expression Analysis, and Target Prediction of Flax Genotroph MicroRNAs Under Normal and Nutrient Stress Conditions

(2016) Nataliya V. Melnikova et al.   Frontiers in Plant Science

Extensive Families of miRNAs andPHASLoci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants

(2015) Rui Xia et al.   MOLECULAR BIOLOGY AND EVOLUTION

miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data

(2014) Jikai Lei et al.   BIOINFORMATICS

sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software

(2014) Atul Kakrana et al.   NUCLEIC ACIDS RESEARCH

HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis

(2014) S. Li et al.   PLANT CELL

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Physiological, Biochemical, and Molecular Mechanisms of Heat Stress Tolerance in Plants

(2013) Mirza Hasanuzzaman et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum)

(2013) Vitthal T. Barvkar et al.   PLANTA

Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA

(2012) Hai Zhou et al.   CELL RESEARCH

Role of recently evolved miRNA regulation of sunflowerHaWRKY6in response to temperature damage

(2012) Jorge I. Giacomelli et al.   NEW PHYTOLOGIST

The genome of flax (Linum usitatissimum) assembledde novofrom short shotgun sequence reads

(2012) Zhiwen Wang et al.   PLANT JOURNAL

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

Global warming and sexual plant reproduction

(2008) Afif Hedhly et al.   TRENDS IN PLANT SCIENCE