Wisdom of the crowds: A suggested polygenic plan for small-RNA-mediated regulation in bacteria

Hierarchy in Hfq Chaperon Occupancy of Small RNA Targets Plays a Major Role in Their Regulation

(2020) Raya Faigenbaum-Romm et al.   Cell Reports

The RNA-binding protein Hfq assembles into foci-like structures in nitrogen starved Escherichia coli

(2020) Josh McQuail et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RNA-Binding Proteins Driving the Regulatory Activity of Small Non-coding RNAs in Bacteria

(2020) Ana P. Quendera et al.   Frontiers in Molecular Biosciences

Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer’s disease risk

(2019) Iris E. Jansen et al.   NATURE GENETICS

Identification of common genetic risk variants for autism spectrum disorder

(2019) Jakob Grove et al.   NATURE GENETICS

New molecular interactions broaden the functions of the RNA chaperone Hfq

(2019) Ricardo F. dos Santos et al.   CURRENT GENETICS

Spatiotemporal Organization of the E. coli Transcriptome: Translation Independence and Engagement in Regulation

(2019) Shanmugapriya Kannaiah et al.   MOLECULAR CELL

RNA-RNA Interactomes of ProQ and Hfq Reveal Overlapping and Competing Roles

(2019) Sahar Melamed et al.   MOLECULAR CELL

Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination

(2019) Roby P. Bhattacharyya et al.   NATURE MEDICINE

Bacterial Adaptation to Antibiotics through Regulatory RNAs

(2018) Brice Felden et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3′ Ends

(2018) Erik Holmqvist et al.   MOLECULAR CELL

Protein Phase Separation: A New Phase in Cell Biology

(2018) Steven Boeynaems et al.   TRENDS IN CELL BIOLOGY

A New Lens for RNA Localization: Liquid-Liquid Phase Separation

(2018) Erin M. Langdon et al.   Annual Review of Microbiology

Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes

(2018) Angli Xue et al.   Nature Communications

The infinitesimal model: Definition, derivation, and implications

(2017) N.H. Barton et al.   THEORETICAL POPULATION BIOLOGY

Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo

(2016) Erik Holmqvist et al.   EMBO JOURNAL

The causes of human variability

(2016) R.A. Fisher   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Global Mapping of Small RNA-Target Interactions in Bacteria

(2016) Sahar Melamed et al.   MOLECULAR CELL

Interconnection of post-transcriptional regulation: The RNA-binding protein Hfq is a novel target of the Lon protease in Pseudomonas aeruginosa

(2016) Lucía Fernández et al.   Scientific Reports

Simultaneous generation of many RNA-seq libraries in a single reaction

(2015) Alexander A Shishkin et al.   NATURE METHODS

Identification of novel sRNAs involved in biofilm formation, motility and fimbriae formation in Escherichia coli

(2015) Geunu Bak et al.   Scientific Reports

TheEscherichia coliRNA processing and degradation machinery is compartmentalized within an organized cellular network

(2013) Aziz Taghbalout et al.   BIOCHEMICAL JOURNAL

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella

(2013) Franziska Mika et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Majority of Animal Genes Are Required for Wild-Type Fitness

(2012) Arun K. Ramani et al.   CELL

Esre: A novel essential non-coding RNA inEscherichia coli

(2012) Zhichao Chen et al.   FEBS LETTERS

The Base-Pairing RNA Spot 42 Participates in a Multioutput Feedforward Loop to Help Enact Catabolite Repression in Escherichia coli

(2011) Chase L. Beisel et al.   MOLECULAR CELL

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

GenomeView: a next-generation genome browser

(2011) T. Abeel et al.   NUCLEIC ACIDS RESEARCH

A Role for the RNA Chaperone Hfq in Controlling Adherent-Invasive Escherichia coli Colonization and Virulence

(2011) Karina T. Simonsen et al.   PLoS One

Translation-Independent Localization of mRNA in E. coli

(2011) K. Nevo-Dinur et al.   SCIENCE

Regulatory RNA in Bacterial Pathogens

(2010) Kai Papenfort et al.   Cell Host & Microbe

Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

(2010) Pierre Mandin et al.   EMBO JOURNAL

Reprogramming of anaerobic metabolism by the FnrS small RNA

(2010) Sylvain Durand et al.   MOLECULAR MICROBIOLOGY

RNAs: regulators of bacterial virulence

(2010) Jonas Gripenland et al.   NATURE REVIEWS MICROBIOLOGY

Protein Subcellular Localization in Bacteria

(2010) D. Z. Rudner et al.   Cold Spring Harbor Perspectives in Biology

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Small RNAs and Small Proteins Involved in Resistance to Cell Envelope Stress and Acid Shock in Escherichia coli: Analysis of a Bar-Coded Mutant Collection

(2009) E. C. Hobbs et al.   JOURNAL OF BACTERIOLOGY

A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides

(2009) Kyung Moon et al.   MOLECULAR MICROBIOLOGY

Adaptive prediction of environmental changes by microorganisms

(2009) Amir Mitchell et al.   NATURE

Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances

(2008) Irith Wiegand et al.   Nature Protocols

The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes

(2008) M. E. Hillenmeyer et al.   SCIENCE