Environmental DNA Monitoring of Biodiversity Hotspots in Danish Marine Waters

Integrating eDNA metabarcoding and simultaneous underwater visual surveys to describe complex fish communities in a marine biodiversity hotspot

(2021) Tania Valdivia‐Carrillo et al.   Molecular Ecology Resources

Contribution of boulder reef habitats to oxygen dynamics of a shallow estuary

(2021) Peter A.U. Staehr et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The current state of DNA barcoding of macroalgae in the Mediterranean Sea: presently lacking but urgently required

(2020) Angela G. Bartolo et al.   BOTANICA MARINA

The effect of temperature on environmental DNA degradation of Japanese eel

(2020) Akihide Kasai et al.   FISHERIES SCIENCE

Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA

(2020) Beverly McClenaghan et al.   PLoS One

A Marine Biodiversity Observation Network for Genetic Monitoring of Hard-Bottom Communities (ARMS-MBON)

(2020) Matthias Obst et al.   Frontiers in Marine Science

Atlantic cod Gadus morhua save energy on stone reefs: implications for the attraction versus production debate in relation to reefs

(2019) A Schwartzbach et al.   MARINE ECOLOGY PROGRESS SERIES

Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement

(2018) Gert-Jan Jeunen et al.   Molecular Ecology Resources

Behavioural changes of Atlantic cod (Gadus morhua ) after marine boulder reef restoration: Implications for coastal habitat management and Natura 2000 areas

(2017) L. D. Kristensen et al.   FISHERIES MANAGEMENT AND ECOLOGY

Capacity shortfalls hinder the performance of marine protected areas globally

(2017) David A. Gill et al.   NATURE

Substantial role of macroalgae in marine carbon sequestration

(2016) Dorte Krause-Jensen et al.   Nature Geoscience

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Temporal correlations in population trends: Conservation implications from time-series analysis of diverse animal taxa

(2015) David Keith et al.   BIOLOGICAL CONSERVATION

Fish environmental DNA is more concentrated in aquatic sediments than surface water

(2015) Cameron R. Turner et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

The ecology of environmental DNA and implications for conservation genetics

(2015) Matthew A. Barnes et al.   CONSERVATION GENETICS

The downside of eDNA as a survey tool in water bodies

(2015) Jean-Marc Roussel et al.   JOURNAL OF APPLIED ECOLOGY

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

(2015) Matthieu Leray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

Environmental DNA surveillance for invertebrate species: advantages and technical limitations to detect invasive crayfishProcambarus clarkiiin freshwater ponds

(2014) Anne Tréguier et al.   JOURNAL OF APPLIED ECOLOGY

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Re-established stony reef attracts harbour porpoises Phocoena phocoena

(2013) L Mikkelsen et al.   MARINE ECOLOGY PROGRESS SERIES

Detecting an elusive invasive species: a diagnostic PCR to detect Burmese python in Florida waters and an assessment of persistence of environmental DNA

(2013) Antoinette J. Piaggio et al.   Molecular Ecology Resources

Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrogLithobates catesbeianus

(2012) Tony Dejean et al.   JOURNAL OF APPLIED ECOLOGY

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

Benthic and Pelagic Primary Production in Different Nutrient Regimes

(2011) Dorte Krause-Jensen et al.   Estuaries and Coasts

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

The Analysis of Biodiversity Using Rank Abundance Distributions

(2009) Scott D. Foster et al.   BIOMETRICS

The Gray Zone: Relationships between habitat loss and marine diversity and their applications in conservation

(2008) Laura Airoldi et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY