KNNCNV: A K-Nearest Neighbor Based Method for Detection of Copy Number Variations Using NGS Data

IhybCNV: An intra-hybrid approach for CNV detection from next-generation sequencing data

(2021) Kun Xie et al.   DIGITAL SIGNAL PROCESSING

Genomic copy number variation study of nine Macaca species provides new insights into their genetic divergence, adaptation and biomedical application

(2020) Jing Li et al.   Genome Biology and Evolution

CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data

(2019) Xiguo Yuan et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Detection of Significant Copy Number Variations From Multiple Samples in Next-Generation Sequencing Data

(2018) Xiguo Yuan et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

iCopyDAV: Integrated platform for copy number variations—Detection, annotation and visualization

(2018) Prashanthi Dharanipragada et al.   PLoS One

IntSIM: An Integrated Simulator of Next-Generation Sequencing Data

(2017) Xiguo Yuan et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Convergent Balancing Selection on an Antimicrobial Peptide in Drosophila

(2016) Robert L. Unckless et al.   CURRENT BIOLOGY

CNV-RF Is a Random Forest–Based Copy Number Variation Detection Method Using Next-Generation Sequencing

(2016) Getiria Onsongo et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

GROM-RD: resolving genomic biases to improve read depth detection of copy number variants

(2015) Sean D. Smith et al.   PeerJ

Copy number variation detection using next generation sequencing read counts

(2014) Heng Wang et al.   BMC BIOINFORMATICS

Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives

(2013) Min Zhao et al.   BMC BIOINFORMATICS

Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster

(2013) Daniel R. Schrider et al.   GENETICS

Predicting Epileptic Seizures in Scalp EEG Based on a Variational Bayesian Gaussian Mixture Model of Zero-Crossing Intervals

(2013) Ali Shahidi Zandi et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Statistical challenges associated with detecting copy number variations with next-generation sequencing

(2012) Shu Mei Teo et al.   BIOINFORMATICS

Genome-wide identification of significant aberrations in cancer genome

(2012) Xiguo Yuan et al.   BMC GENOMICS

Isolation-Based Anomaly Detection

(2012) Fei Tony Liu et al.   ACM Transactions on Knowledge Discovery from Data

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

(2011) Valentina Boeva et al.   BIOINFORMATICS

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

(2011) A. Abyzov et al.   GENOME RESEARCH

ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads

(2011) Christopher A. Miller et al.   PLoS One

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

(2010) Valentina Boeva et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The variational approximation for Bayesian inference

(2009) Dimitris G. Tzikas et al.   IEEE SIGNAL PROCESSING MAGAZINE