Genetic Interaction Between Site-Specific Epigenetic Marks and Roles of H4v in Transcription Termination in Trypanosoma brucei

Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes

(2020) Rudo Kieft et al.   PLoS Genetics

Checkpoint Responses to DNA Double-Strand Breaks

(2020) David P. Waterman et al.   Annual Review of Biochemistry

Distinct roles for H4 and H2A.Z acetylation in RNA transcription in African trypanosomes

(2020) Amelie J. Kraus et al.   Nature Communications

Nucleosomes effectively shield DNA from radiation damage in living cells

(2020) Francesca Brambilla et al.   NUCLEIC ACIDS RESEARCH

The 3′ processing of antisense RNAs physically links to chromatin-based transcriptional control

(2020) Xiaofeng Fang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of gene expression in trypanosomatids: living with polycistronic transcription

(2019) Christine Clayton   Open Biology

Transcriptional Regulation of Telomeric Expression Sites and Antigenic Variation in Trypanosomes

(2018) Igor Cestari et al.   CURRENT GENOMICS

Recruitment kinetics of the homologous recombination pathway in procyclic forms of Trypanosoma brucei after ionizing radiation treatment

(2018) Paula Andrea Marin et al.   Scientific Reports

A Critical Role of TET1/2 Proteins in Cell-Cycle Progression of Trophoblast Stem Cells

(2018) Stephanie Chrysanthou et al.   Stem Cell Reports

Heterochromatin: Guardian of the Genome

(2018) Aniek Janssen et al.   Annual Review of Cell and Developmental Biology

Genome organization and DNA accessibility control antigenic variation in trypanosomes

(2018) Laura S. M. Müller et al.   NATURE

Genome-wide function of MCM-BP in Trypanosoma brucei DNA replication and transcription

(2018) Hee-Sook Kim   NUCLEIC ACIDS RESEARCH

Variant surface glycoprotein density defines an immune evasion threshold for African trypanosomes undergoing antigenic variation

(2017) Jason Pinger et al.   Nature Communications

Gene expression in Kinetoplastids

(2016) CE Clayton   CURRENT OPINION IN MICROBIOLOGY

Base J represses genes at the end of polycistronic gene clusters inLeishmania majorby promoting RNAP II termination

(2016) David L. Reynolds et al.   MOLECULAR MICROBIOLOGY

The Determinants of Directionality in Transcriptional Initiation

(2016) Dia N. Bagchi et al.   TRENDS IN GENETICS

5-Hydroxymethylcytosine Marks Sites of DNA Damage and Promotes Genome Stability

(2016) Georgia Rose Kafer et al.   Cell Reports

PAF Complex Plays Novel Subunit-Specific Roles in Alternative Cleavage and Polyadenylation

(2016) Yan Yang et al.   PLoS Genetics

Base J and H3.V Regulate Transcriptional Termination in Trypanosoma brucei

(2016) Danae Schulz et al.   PLoS Genetics

Histone H3 Variant Regulates RNA Polymerase II Transcription Termination and Dual Strand Transcription of siRNA Loci in Trypanosoma brucei

(2016) David Reynolds et al.   PLoS Genetics

A Conserved DNA Repeat Promotes Selection of a Diverse Repertoire of Trypanosoma brucei Surface Antigens from the Genomic Archive

(2016) Galadriel Hovel-Miner et al.   PLoS Genetics

Mapping replication dynamics in Trypanosoma brucei reveals a link with telomere transcription and antigenic variation

(2016) Rebecca Devlin et al.   eLife

A Chromatin-Based Mechanism for Limiting Divergent Noncoding Transcription

(2014) Sebastian Marquardt et al.   CELL

Playing TETris with DNA modifications

(2014) B. Delatte et al.   EMBO JOURNAL

Identification of the Glucosyltransferase That Converts Hydroxymethyluracil to Base J in the Trypanosomatid Genome

(2014) Whitney Bullard et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Capturing the variant surface glycoprotein repertoire (the VSGnome) of Trypanosoma brucei Lister 427

(2014) George A.M. Cross et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Kinetoplastid-specific histone variant functions are conserved in Leishmania major

(2013) Britta A. Anderson et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Strategies to construct null and conditional null Trypanosoma brucei mutants using Cre-recombinase and loxP

(2013) Hee-Sook Kim et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription

(2013) William A. Pastor et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MCM-BP Is Required for Repression of Life-Cycle Specific Genes Transcribed by RNA Polymerase I in the Mammalian Infectious Form of Trypanosoma brucei

(2013) Hee-Sook Kim et al.   PLoS One

Glucosylated Hydroxymethyluracil, DNA Base J, Prevents Transcriptional Readthrough in Leishmania

(2012) Henri G.A.M. van Luenen et al.   CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Developmental Progression to Infectivity in Trypanosoma brucei Triggered by an RNA-Binding Protein

(2012) N. G. Kolev et al.   SCIENCE

Genome-wide Analysis Reveals Extensive Functional Interaction between DNA Replication Initiation and Transcription in the Genome of Trypanosoma brucei

(2012) Calvin Tiengwe et al.   Cell Reports

Telomere Length Affects the Frequency and Mechanism of Antigenic Variation in Trypanosoma brucei

(2012) Galadriel A. Hovel-Miner et al.   PLoS Pathogens

Genome-scale analysis of replication timing: from bench to bioinformatics

(2011) Tyrone Ryba et al.   Nature Protocols

More forks on the road to replication stress recovery

(2011) C. Allen et al.   Journal of Molecular Cell Biology

Molecular mechanisms underlying the control of antigenic variation in African trypanosomes

(2010) David Horn et al.   CURRENT OPINION IN MICROBIOLOGY

Gene Expression in Trypanosomatid Parasites

(2010) Santiago Martínez-Calvillo et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Histone H3 trimethylated at lysine 4 is enriched at probable transcription start sites in Trypanosoma brucei

(2010) Jessica R. Wright et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei

(2010) Laura J. Cliffe et al.   NUCLEIC ACIDS RESEARCH

TOPO3α Influences Antigenic Variation by Monitoring Expression-Site-Associated VSG Switching in Trypanosoma brucei

(2010) Hee-Sook Kim et al.   PLoS Pathogens

Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei

(2009) T. N. Siegel et al.   GENES & DEVELOPMENT

JBP1 and JBP2 are two distinct thymidine hydroxylases involved in J biosynthesis in genomic DNA of African trypanosomes

(2009) L. J. Cliffe et al.   NUCLEIC ACIDS RESEARCH

Base J: Discovery, Biosynthesis, and Possible Functions

(2008) Piet Borst et al.   Annual Review of Microbiology

Telomeric Expression Sites Are Highly Conserved in Trypanosoma brucei

(2008) Christiane Hertz-Fowler et al.   PLoS One

Telomeric position effect: From the yeast paradigm to human pathologies?

(2007) Alexandre Ottaviani et al.   BIOCHIMIE