Tick virome diversity in Hubei Province, China, and the influence of host ecology

Identification of a new orthonairovirus associated with human febrile illness in China

(2021) Jun Ma et al.   NATURE MEDICINE

RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles

(2020) Mathilde Gondard et al.   Viruses-Basel

Metatranscriptomic virome assessment of Rhipicephalus microplus from Colombia

(2020) Giovan F. Gómez et al.   Ticks and Tick-Borne Diseases

Circumpolar diversification of the Ixodes uriae tick virome

(2020) John H.-O. Pettersson et al.   PLoS Pathogens

Diversity and circulation of Jingmen tick virus in ticks and mammals

(2020) Jing-Jing Guo et al.   Virus Evolution

Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities

(2020) Na Jia et al.   CELL

Depicting the RNA Virome of Hematophagous Arthropods from Belgrade, Serbia

(2020) Maja Stanojević et al.   Viruses-Basel

Novel SFTSV Phylogeny Reveals New Reassortment Events and Migration Routes

(2020) Xiaoli Wu et al.   VIROLOGICA SINICA

Diamond: A Multi-Modal DIA Mass Spectrometry Data Processing Pipeline

(2020) Chenxin Li et al.   BIOINFORMATICS

Detection of a novel tick-borne flavivirus and its serological surveillance

(2019) Hiroshi Shimoda et al.   Ticks and Tick-Borne Diseases

Genomes and seroprevalence of severe fever with thrombocytopenia syndrome virus and Nairobi sheep disease virus in Haemaphysalis longicornis ticks and goats in Hubei, China

(2019) Ling’En Yang et al.   VIROLOGY

A New Segmented Virus Associated with Human Febrile Illness in China

(2019) Ze-Dong Wang et al.   NEW ENGLAND JOURNAL OF MEDICINE

Emergence of human infection with Jingmen tick virus in China: A retrospective study

(2019) Na Jia et al.   EBioMedicine

Detection of novel tick-borne pathogen, Alongshan virus, in Ixodes ricinus ticks, south-eastern Finland, 2019

(2019) Suvi Kuivanen et al.   Eurosurveillance

Viral Diversity of Tick Species Parasitizing Cattle and Dogs in Trinidad and Tobago

(2019) Stephen Sameroff et al.   Scientific Reports

Demographic and environmental drivers of metagenomic viral diversity in vampire bats

(2019) Laura M. Bergner et al.   MOLECULAR ECOLOGY

An Ecosystems Perspective on Virus Evolution and Emergence

(2019) Rebecca K. French et al.   TRENDS IN MICROBIOLOGY

Survey and Characterization of Jingmen Tick Virus Variants

(2019) Ender Dinçer et al.   Viruses-Basel

Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses

(2019) Sarah Temmam et al.   mSphere

OUP accepted manuscript

(2018)   BIOINFORMATICS

Viral metagenomics, genetic and evolutionary characteristics of Crimean-Congo hemorrhagic fever orthonairovirus in humans, Kosovo

(2018) Petra Emmerich et al.   INFECTION GENETICS AND EVOLUTION

Isolation and genomic characterization of lymphocytic choriomeningitis virus in ticks from northeastern China

(2018) Li Zhang et al.   Transboundary and Emerging Diseases

Identification of Novel Viruses in Amblyomma americanum , Dermacentor variabilis , and Ixodes scapularis Ticks

(2018) Rafal Tokarz et al.   mSphere

Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil

(2018) William Marciel de Souza et al.   Scientific Reports

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Predicting virus emergence amid evolutionary noise

(2017) Jemma L. Geoghegan et al.   Open Biology

The Essential Role of Tick Salivary Glands and Saliva in Tick Feeding and Pathogen Transmission

(2017) Ladislav Šimo et al.   Frontiers in Cellular and Infection Microbiology

Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons

(2017) Ilias Lagkouvardos et al.   PeerJ

A Multicomponent Animal Virus Isolated from Mosquitoes

(2016) Jason T. Ladner et al.   Cell Host & Microbe

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Molecular detection of severe fever with thrombocytopenia syndrome and tick-borne encephalitis viruses in ixodid ticks collected from vegetation, Republic of Korea, 2014

(2016) Seok-Min Yun et al.   Ticks and Tick-Borne Diseases

Transmission or Within-Host Dynamics Driving Pulses of Zoonotic Viruses in Reservoir–Host Populations

(2016) Raina K. Plowright et al.   PLoS Neglected Tropical Diseases

Factors affecting the ecology of tick-borne encephalitis in Slovenia

(2015) N. KNAP et al.   EPIDEMIOLOGY AND INFECTION

Tick Saliva Enhances Powassan Virus Transmission to the Host, Influencing Its Dissemination and the Course of Disease

(2015) Meghan E. Hermance et al.   JOURNAL OF VIROLOGY

Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses

(2015) Mang Shi et al.   JOURNAL OF VIROLOGY

Emerging tick-borne infections in mainland China: an increasing public health threat

(2015) Li-Qun Fang et al.   LANCET INFECTIOUS DISEASES

The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster

(2015) Claire L. Webster et al.   PLOS BIOLOGY

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

(2015) Ci-Xiu Li et al.   eLife

Virome Analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks Reveals Novel Highly Divergent Vertebrate and Invertebrate Viruses

(2014) R. Tokarz et al.   JOURNAL OF VIROLOGY

A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors

(2014) X.-C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ticks of Australia. The species that infest domestic animals and humans

(2014) STEPHEN C. BARKER et al.   ZOOTAXA

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Fever with Thrombocytopenia Associated with a Novel Bunyavirus in China

(2011) Xue-Jie Yu et al.   NEW ENGLAND JOURNAL OF MEDICINE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Characterization of Powassan viruses from Far Eastern Russia

(2009) Galina N. Leonova et al.   ARCHIVES OF VIROLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS