High-sugar, high-fat, and high-protein diets promote antibiotic resistance gene spreading in the mouse intestinal microbiota

Intestinal Microbiota Mediates High-Fructose and High-Fat Diets to Induce Chronic Intestinal Inflammation

(2021) Rong Tan et al.   Frontiers in Cellular and Infection Microbiology

Horizontal transfer of antibiotic resistance genes in the human gut microbiome

(2020) Ross S McInnes et al.   CURRENT OPINION IN MICROBIOLOGY

Identification of novel mobile colistin resistance gene mcr-10

(2020) Chengcheng Wang et al.   Emerging Microbes & Infections

Insights into the Role of Human Gut Microbiota in Clostridioides difficile Infection

(2020) Melina Kachrimanidou et al.   Microorganisms

Preservatives accelerate the horizontal transfer of plasmid-mediated antimicrobial resistance genes via differential mechanisms

(2020) Tianyu Cen et al.   ENVIRONMENT INTERNATIONAL

Replication of the Salmonella Genomic Island 1 (SGI1) triggered by helper IncC conjugative plasmids promotes incompatibility and plasmid loss

(2020) Kévin T. Huguet et al.   PLoS Genetics

The cultivable microbiota of the human distal ileum

(2020) Heidi Cecilie Villmones et al.   CLINICAL MICROBIOLOGY AND INFECTION

Widespread transfer of mobile antibiotic resistance genes within individual gut microbiomes revealed through bacterial Hi-C

(2020) Alyssa G. Kent et al.   Nature Communications

Metagenomic insights into the distribution of antibiotic resistome between the gut-associated environments and the pristine environments

(2019) Jiaxiong Zeng et al.   ENVIRONMENT INTERNATIONAL

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Behavior of last resort antibiotic resistance genes (mcr-1 and blaNDM-1) in a drinking water supply system and their possible acquisition by the mouse gut flora

(2019) Hira Khan et al.   ENVIRONMENTAL POLLUTION

Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis

(2018) Evelina Tacconelli et al.   LANCET INFECTIOUS DISEASES

A Vegetarian Diet Is a Major Determinant of Gut Microbiota Composition in Early Pregnancy

(2018) Helen Barrett et al.   Nutrients

Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements

(2018) Katariina Pärnänen et al.   Nature Communications

Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease

(2017) Joseph M. Pickard et al.   IMMUNOLOGICAL REVIEWS

Aquatic animals promote antibiotic resistance gene dissemination in water via conjugation: Role of different regions within the zebra fish intestinal tract, and impact on fish intestinal microbiota

(2017) Jialun Fu et al.   MOLECULAR ECOLOGY

Gut microbiota and IBD: causation or correlation?

(2017) Josephine Ni et al.   Nature Reviews Gastroenterology & Hepatology

Inflammation boosts bacteriophage transfer between Salmonella spp.

(2017) Médéric Diard et al.   SCIENCE

Multidrug-resistant Enterobacteriaceae, Pseudomonas aeruginosa , and vancomycin-resistant Enterococcus : Three major threats to hematopoietic stem cell transplant recipients

(2017) Michael J. Satlin et al.   Transplant Infectious Disease

Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production

(2017) Yang Wang et al.   Nature Microbiology

Dissemination of the mcr-1 colistin resistance gene

(2016) Herman Tse et al.   LANCET INFECTIOUS DISEASES

Diet, microorganisms and their metabolites and colon cancer

(2016) Stephen J. D. O'Keefe   Nature Reviews Gastroenterology & Hepatology

In Vivo Horizontal Gene Transfer of the Carbapenemase OXA-48 During a Nosocomial Outbreak

(2015) S. Gottig et al.   CLINICAL INFECTIOUS DISEASES

Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

(2014) Uli Klümper et al.   ISME Journal

Potential of fecal microbiota for early-stage detection of colorectal cancer

(2014) G. Zeller et al.   Molecular Systems Biology

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

What is a resistance gene? Ranking risk in resistomes

(2014) José L. Martínez et al.   NATURE REVIEWS MICROBIOLOGY

Granulocytes Impose a Tight Bottleneck upon the Gut Luminal Pathogen Population during Salmonella Typhimurium Colitis

(2014) Lisa Maier et al.   PLoS Pathogens

Single-Cell Analyses Revealed Transfer Ranges of IncP-1, IncP-7, and IncP-9 Plasmids in a Soil Bacterial Community

(2013) Masaki Shintani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Resistance surveillance program report for selected European nations (2011)

(2013) Ronald N. Jones et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Host range diversification within the IncP-1 plasmid group

(2013) H. Yano et al.   MICROBIOLOGY-SGM

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Food and human gut as reservoirs of transferable antibiotic resistance encoding genes

(2013) Jean-Marc Rolain   Frontiers in Microbiology

Multiple Roles of Extracellular Polymeric Substances on Resistance of Biofilm and Detached Clusters

(2012) Zheng Xue et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

(2012) Daniel R. Mende et al.   PLoS One

Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae

(2012) B. Stecher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origin and Evolution of Antibiotic Resistance: The Common Mechanisms of Emergence and Spread in Water Bodies

(2012) Agnese Lupo et al.   Frontiers in Microbiology

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

FLASH: fast length adjustment of short reads to improve genome assemblies

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Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens

(2010) Yvonne Pfeifer et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Predicting Plasmid Promiscuity Based on Genomic Signature

(2010) H. Suzuki et al.   JOURNAL OF BACTERIOLOGY

Gut inflammation provides a respiratory electron acceptor for Salmonella

(2010) Sebastian E. Winter et al.   NATURE

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

Gut Microbiota in Health and Disease

(2010) Inna Sekirov et al.   PHYSIOLOGICAL REVIEWS

Short-Term Antibiotic Treatment Has Differing Long-Term Impacts on the Human Throat and Gut Microbiome

(2010) Hedvig E. Jakobsson et al.   PLoS One

Characterization of the Tn916 Conjugative Transposon in a Food-Borne Strain of Lactobacillus paracasei

(2009) C. Devirgiliis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice

(2009) Chenhong Zhang et al.   ISME Journal