SNPs, InDels, and Microsatellites within and Near to Rice NBS-LRR Resistance Gene Candidates

A new comprehensive annotation of leucine‐rich repeat‐containing receptors in rice

(2021) Céline Gottin et al.   PLANT JOURNAL

Evolutionary dynamics and impacts of chromosome regions carrying R-gene clusters in rice

(2020) Hiroshi Mizuno et al.   Scientific Reports

Shared cis-regulatory architecture identified across defense response genes is associated with broad-spectrum quantitative resistance in rice

(2019) Bradley W. Tonnessen et al.   Scientific Reports

A novel resistance gene for bacterial blight in rice, Xa43(t) identified by GWAS, confirmed by QTL mapping using a bi-parental population

(2019) Suk-Man Kim et al.   PLoS One

The global burden of pathogens and pests on major food crops

(2019) Serge Savary et al.   Nature Ecology & Evolution

Large-scale identification and functional analysis of NLR genes in blast resistance in the Tetep rice genome sequence

(2019) Long Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accelerating public sector rice breeding with high-density KASP markers derived from whole genome sequencing of indica rice

(2018) Katherine A. Steele et al.   MOLECULAR BREEDING

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

(2018) Joshua C. Stein et al.   NATURE GENETICS

Genome-Wide Analysis of Genetic Variations and the Detection of Rich Variants of NBS-LRR Encoding Genes in Common Wild Rice Lines

(2018) Hang Yu et al.   PLANT MOLECULAR BIOLOGY REPORTER

JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm

(2018) Justin B Miller et al.   BIOINFORMATICS

Navigating complexity to breed disease-resistant crops

(2017) Rebecca Nelson et al.   NATURE REVIEWS GENETICS

Mechanisms to Mitigate the Trade-Off between Growth and Defense

(2017) Talia L. Karasov et al.   PLANT CELL

Sequencing and de novo assembly of a near complete indica rice genome

(2017) Huilong Du et al.   Nature Communications

The Diversification of PlantNBS-LRRDefense Genes Directs the Evolution of MicroRNAs That Target Them

(2016) Yu Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive sequence divergence between the reference genomes of two eliteindicarice varieties Zhenshan 97 and Minghui 63

(2016) Jianwei Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes

(2016) Kyuha Choi et al.   PLoS Genetics

NLR-parser: rapid annotation of plant NLR complements

(2015) Burkhard Steuernagel et al.   BIOINFORMATICS

Identification of novel alleles of the rice blast resistance gene Pi54

(2015) Kumar Vasudevan et al.   Scientific Reports

The 3,000 rice genomes project

(2014)   GigaScience

Plant Nucleotide Binding Site–Leucine-Rich Repeat (NBS-LRR) Genes: Active Guardians in Host Defense Responses

(2013) Daniela Marone et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics

(2013) Hiroaki Sakai et al.   PLANT AND CELL PHYSIOLOGY

Comparative BAC-based physical mapping ofOryza sativassp.indicavar. 93-11 and evaluation of the two rice reference sequence assemblies

(2013) Yonglong Pan et al.   PLANT JOURNAL

Novel applications of motif-directed profiling to identify disease resistance genes in plants

(2013) Jack H Vossen et al.   Plant Methods

Analysis of TIR- and non-TIR-NBS-LRR disease resistance gene analogous in pepper: characterization, genetic variation, functional divergence and expression patterns

(2012) Hongjian Wan et al.   BMC GENOMICS

Identification and localisation of the NB-LRR gene family within the potato genome

(2012) Florian Jupe et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Dynamic Nucleotide-Binding Site and Leucine-Rich Repeat-Encoding Genes in the Grass Family

(2012) S. Luo et al.   PLANT PHYSIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication

(2010) Chun Zhai et al.   NEW PHYTOLOGIST

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Identification of a New Rice Blast Resistance Gene, Pid3 , by Genomewide Comparison of Paired Nucleotide-Binding Site–Leucine-Rich Repeat Genes and Their Pseudogene Alleles Between the Two Sequenced Rice Genomes

(2009) Junjun Shang et al.   GENETICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Loss of Function of a Proline-Containing Protein Confers Durable Disease Resistance in Rice

(2009) S. Fukuoka et al.   SCIENCE