An Oil Hyper-Accumulator Mutant Highlights Peroxisomal ATP Import as a Regulatory Step for Fatty Acid Metabolism in Aurantiochytrium limacinum

The zoospores of the thraustochytrid Aurantiochytrium limacinum : Transcriptional reprogramming and lipid metabolism associated to their specific functions

(2020) Younès Dellero et al.   ENVIRONMENTAL MICROBIOLOGY

Improvement of fatty acid productivity of thraustochytrid, Aurantiochytrium sp. by genome editing

(2020) Kenshi Watanabe et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

SVIM: Structural Variant Identification using Mapped Long Reads

(2019) David Heller et al.   BIOINFORMATICS

Genome-scale Sequence Disruption Following Biolistic Transformation in Rice and Maize

(2019) Jianing Liu et al.   PLANT CELL

The glycerol-3-phosphate acyltransferase PLAT2 functions in the generation of DHA-rich glycerolipids in Aurantiochytrium limacinum F26-b

(2019) Eri Nutahara et al.   PLoS One

Plant peroxisomal solute transporter proteins

(2019) Lennart Charton et al.   Journal of Integrative Plant Biology

NGPhylogeny.fr: new generation phylogenetic services for non-specialists

(2019) Frédéric Lemoine et al.   NUCLEIC ACIDS RESEARCH

The lipid metabolism in thraustochytrids

(2019) Christian Morabito et al.   PROGRESS IN LIPID RESEARCH

Ecophysiology and lipid dynamics of a eukaryotic mangrove decomposer

(2018) Younès Dellero et al.   ENVIRONMENTAL MICROBIOLOGY

PANNZER2: a rapid functional annotation web server

(2018) Petri Törönen et al.   NUCLEIC ACIDS RESEARCH

Exploring the function of acyltransferase and domain replacement in order to change the polyunsaturated fatty acid profile of Schizochytrium sp.

(2018) Lu-jing Ren et al.   Algal Research-Biomass Biofuels and Bioproducts

Functions of PKS Genes in Lipid Synthesis of Schizochytrium sp. by Gene Disruption and Metabolomics Analysis

(2018) Zhipeng Li et al.   MARINE BIOTECHNOLOGY

Proposal of a new thraustochytrid genus Hondaea gen. nov. and comparison of its lipid dynamics with the closely related pseudo-cryptic genus Aurantiochytrium

(2018) Younès Dellero et al.   Algal Research-Biomass Biofuels and Bioproducts

Enhanced triacylglycerol production in the diatom Phaeodactylum tricornutum by inactivation of a Hotdog-fold thioesterase gene using TALEN-based targeted mutagenesis

(2018) Xiahui Hao et al.   Biotechnology for Biofuels

Cloning of the pks3 gene of Aurantiochytrium limacinum and functional study of the 3-ketoacyl-ACP reductase and dehydratase enzyme domains

(2018) Zhu Liu et al.   PLoS One

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads

(2017) Chuan-Le Xiao et al.   NATURE METHODS

Molecular and FISH analyses of a 53-kbp intact DNA fragment inserted by biolistics in wheat (Triticum aestivum L.) genome

(2017) A. Partier et al.   PLANT CELL REPORTS

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

Thraustochytrids as production organisms for docosahexaenoic acid (DHA), squalene, and carotenoids

(2016) Inga Marie Aasen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biosynthetic mechanism of very long chain polyunsaturated fatty acids inThraustochytrium sp.26185

(2016) Dauenpen Meesapyodsuk et al.   JOURNAL OF LIPID RESEARCH

Advancing Crop Transformation in the Era of Genome Editing

(2016) Fredy Altpeter et al.   PLANT CELL

Unraveling fatty acid transport and activation mechanisms in Yarrowia lipolytica

(2015) Rémi Dulermo et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

A new strain of docosahexaenoic acid producing microalga from Malaysian coastal waters

(2015) Vidyah Manikan et al.   Algal Research-Biomass Biofuels and Bioproducts

Novel Lysophospholipid Acyltransferase PLAT1 of Aurantiochytrium limacinum F26-b Responsible for Generation of Palmitate-Docosahexaenoate-Phosphatidylcholine and Phosphatidylethanolamine

(2014) Eriko Abe et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Data-based filtering for replicated high-throughput transcriptome sequencing experiments

(2013) Andrea Rau et al.   BIOINFORMATICS

Abundance and Novel Lineages of Thraustochytrids in Hawaiian Waters

(2013) Qian Li et al.   MICROBIAL ECOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

(2012) Marco Falda et al.   BMC BIOINFORMATICS

Peroxisomal Fatty Acid Uptake Mechanism inSaccharomyces cerevisiae

(2012) Carlo W. T. van Roermund et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Analysis of Δ12-fatty acid desaturase function revealed that two distinct pathways are active for the synthesis of PUFAs inT. aureumATCC 34304

(2012) Takanori Matsuda et al.   JOURNAL OF LIPID RESEARCH

Stable integration of an engineered megabase repeat array into the maize genome

(2012) Han Zhang et al.   PLANT JOURNAL

Increase of Eicosapentaenoic Acid in Thraustochytrids through Thraustochytrid Ubiquitin Promoter-Driven Expression of a Fatty Acid Δ5 Desaturase Gene

(2011) Takumi Kobayashi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Increasing evidence for the important role of Labyrinthulomycetes in marine ecosystems

(2011) Seshagiri Raghukumar et al.   BOTANICA MARINA

Structure and function of factor XI

(2010) J. Emsley et al.   BLOOD

Sequence diversity and novelty of natural assemblages of picoeukaryotes from the Indian Ocean

(2010) Ramon Massana et al.   ISME Journal

Characterization of Both Polyunsaturated Fatty Acid Biosynthetic Pathways in Schizochytrium sp.

(2009) J. Casey Lippmeier et al.   LIPIDS

Unintended consequence of plant transformation: biolistic transformation caused transpositional activation of an endogenous retrotransposon Tos17 in rice ssp. japonica cv. Matsumae

(2009) R. Wu et al.   PLANT CELL REPORTS

Dietary omega 3 fatty acids and the developing brain

(2008) Sheila M. Innis   BRAIN RESEARCH

Thraustochytrid Marine Protists: Production of PUFAs and Other Emerging Technologies

(2008) Seshagiri Raghukumar   MARINE BIOTECHNOLOGY

Peroxisomal ATP Import Is Essential for Seedling Development in Arabidopsis thaliana

(2008) N. Linka et al.   PLANT CELL

Proteomic Identification and Characterization of a Novel Peroxisomal Adenine Nucleotide Transporter Supplying ATP for Fatty Acid  -Oxidation in Soybean and Arabidopsis

(2008) Y. Arai et al.   PLANT CELL