Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes
Authors
Keywords
-
Journal
Nature Microbiology
Volume 6, Issue 10, Pages 1309-1318
Publisher
Springer Science and Business Media LLC
Online
2021-09-28
DOI
10.1038/s41564-021-00966-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
- (2021) Matthew R. Olm et al. NATURE BIOTECHNOLOGY
- The effect of a microbial ecosystem therapeutic (MET-2) on recurrent Clostridioides difficile infection: a phase 1, open-label, single-group trial
- (2021) Dina Kao et al. Lancet Gastroenterology & Hepatology
- Fecal IgA Levels Are Determined by Strain-Level Differences in Bacteroides ovatus and Are Modifiable by Gut Microbiota Manipulation
- (2020) Chao Yang et al. Cell Host & Microbe
- Diversity within species: interpreting strains in microbiomes
- (2020) Thea Van Rossum et al. NATURE REVIEWS MICROBIOLOGY
- Fecal Microbiota Transplant is Highly Effective in Real-World Practice: Initial Results from the FMT National Registry
- (2020) Colleen R. Kelly et al. GASTROENTEROLOGY
- Defined microbiota transplant restores Th17/RORγt+regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas
- (2020) Graham J. Britton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice
- (2019) Graham J. Britton et al. IMMUNITY
- A human gut bacterial genome and culture collection for improved metagenomic analyses
- (2019) Samuel C. Forster et al. NATURE BIOTECHNOLOGY
- Microbial Engraftment and Efficacy of Fecal Microbiota Transplant for Clostridium Difficile in Patients With and Without Inflammatory Bowel Disease
- (2019) Robert P Hirten et al. INFLAMMATORY BOWEL DISEASES
- Adaptive Strategies of the Candidate Probiotic E. coli Nissle in the Mammalian Gut
- (2019) Nathan Crook et al. Cell Host & Microbe
- Adaptive Evolution within Gut Microbiomes of Healthy People
- (2019) Shijie Zhao et al. Cell Host & Microbe
- A Reverse Ecology Approach Based on a Biological Definition of Microbial Populations
- (2019) Philip Arevalo et al. CELL
- The evolution of the use of faecal microbiota transplantation and emerging therapeutic indications
- (2019) Jessica R Allegretti et al. LANCET
- A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research
- (2019) M. Poyet et al. NATURE MEDICINE
- Drug-Resistant E. coli Bacteremia Transmitted by Fecal Microbiota Transplant
- (2019) Zachariah DeFilipp et al. NEW ENGLAND JOURNAL OF MEDICINE
- Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
- (2018) Christopher S. Smillie et al. Cell Host & Microbe
- Commensal Koch's postulates: establishing causation in human microbiota research
- (2018) B Anne Neville et al. CURRENT OPINION IN MICROBIOLOGY
- Best practices for analysing microbiomes
- (2018) Rob Knight et al. NATURE REVIEWS MICROBIOLOGY
- Clinical Application and Potential of Fecal Microbiota Transplantation
- (2018) R.E. Ooijevaar et al. Annual Review of Medicine
- Effect of Oral Capsule– vs Colonoscopy-Delivered Fecal Microbiota Transplantation on Recurrent Clostridium difficile Infection
- (2017) Dina Kao et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Multidonor intensive faecal microbiota transplantation for active ulcerative colitis: a randomised placebo-controlled trial
- (2017) Sudarshan Paramsothy et al. LANCET
- Effect of Fecal Microbiota Transplantation on Recurrence in Multiply Recurrent Clostridium difficile Infection
- (2016) Colleen R. Kelly et al. ANNALS OF INTERNAL MEDICINE
- Strain competition restricts colonization of an enteric pathogen and prevents colitis
- (2016) Aaron L Hecht et al. EMBO REPORTS
- Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation
- (2016) Hilary P. Browne et al. NATURE
- Durable coexistence of donor and recipient strains after fecal microbiota transplantation
- (2016) Simone S. Li et al. SCIENCE
- Adapting Koch's postulates
- (2016) A. L. Byrd et al. SCIENCE
- Unique Features of Ethnic Mongolian Gut Microbiome revealed by metagenomic analysis
- (2016) Wenjun Liu et al. Scientific Reports
- Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling
- (2016) Jennifer T. Lau et al. Genome Medicine
- Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial
- (2015) Paul Moayyedi et al. GASTROENTEROLOGY
- ConStrains identifies microbial strains in metagenomic datasets
- (2015) Chengwei Luo et al. NATURE BIOTECHNOLOGY
- Identifying strains that contribute to complex diseases through the study of microbial inheritance
- (2015) Jeremiah J. Faith et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Mining the Human Gut Microbiota for Effector Strains that Shape the Immune System
- (2014) Philip P. Ahern et al. IMMUNITY
- Oral, Capsulized, Frozen Fecal Microbiota Transplantation for RelapsingClostridium difficileInfection
- (2014) Ilan Youngster et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
- (2014) Charlie G. Buffie et al. NATURE
- Recovery of the Gut Microbiome following Fecal Microbiota Transplantation
- (2014) A. M. Seekatz et al. mBio
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile
- (2013) Els van Nood et al. NEW ENGLAND JOURNAL OF MEDICINE
- The Long-Term Stability of the Human Gut Microbiota
- (2013) J. J. Faith et al. SCIENCE
- Human gut microbiota community structures in urban and rural populations in Russia
- (2013) Alexander V. Tyakht et al. Nature Communications
- Microbial culturomics: paradigm shift in the human gut microbiome study
- (2012) J.-C. Lagier et al. CLINICAL MICROBIOLOGY AND INFECTION
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Bacterial competition: surviving and thriving in the microbial jungle
- (2009) Michael E. Hibbing et al. NATURE REVIEWS MICROBIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search