Genome-Wide Identification and Analysis of the Ascorbate Peroxidase (APX) Gene Family of Winter Rapeseed (Brassica rapa L.) Under Abiotic Stress

Genome-Wide Analysis of MDHAR Gene Family in Four Cotton Species Provides Insights into Fiber Development via Regulating AsA Redox Homeostasis

(2021) Fangfang Zhou et al.   Plants-Basel

Genome-wide analysis and expression profiles of the StR2R3-MYB transcription factor superfamily in potato (Solanum tuberosum L.)

(2020) Yuanming Li et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Genome-wide identification and analysis of the Q-type C2H2 gene family in potato (Solanum tuberosum L.)

(2020) Zhen Liu et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Physiological and Biochemical Mechanisms and Cytology of Cold Tolerance in Brassica napus

(2020) Weiliang Qi et al.   Frontiers in Plant Science

Screening and verification of reference genes for analysis of gene expression in winter rapeseed (Brassica rapa L.) under abiotic stress

(2020) Li Ma et al.   PLoS One

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

(2020) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Advances and challenges in uncovering cold tolerance regulatory mechanisms in plants

(2019) Yanglin Ding et al.   NEW PHYTOLOGIST

Transcriptome Analysis Reveals Key Cold-Stress-Responsive Genes in Winter Rapeseed (Brassica rapa L.)

(2019) Li Ma et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome Profile Analysis of Winter Rapeseed (Brassica napus L.) in Response to Freezing Stress, Reveal Potentially Connected Events to Freezing Stress

(2019) Yuanyuan Pu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus

(2019) Lijuan Wei et al.   Scientific Reports

Ecological and economic benefits of planting winter rapeseed (Brassica rapa L.) in the wind erosion area of northern China

(2019) Li Ma et al.   Scientific Reports

Genome-Wide Identification and Expression Profiling of Ascorbate Peroxidase (APX) and Glutathione Peroxidase (GPX) Genes Under Drought Stress in Sorghum (Sorghum bicolor L.)

(2018) M. Aydın Akbudak et al.   JOURNAL OF PLANT GROWTH REGULATION

Genome-wide investigation and expression profiling of APX gene family in Gossypium hirsutum provide new insights in redox homeostasis maintenance during different fiber development stages

(2018) Chengcheng Tao et al.   MOLECULAR GENETICS AND GENOMICS

Transgenic Potato Plants Overexpressing SOD and APX Exhibit Enhanced Lignification and Starch Biosynthesis with Improved Salt Stress Tolerance

(2017) Amrina Shafi et al.   PLANT MOLECULAR BIOLOGY REPORTER

Cold regulation of plastid ascorbate peroxidases serves as a priming hub controlling ROS signaling in Arabidopsis thaliana

(2016) Jörn van Buer et al.   BMC PLANT BIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

ROS, Calcium, and Electric Signals: Key Mediators of Rapid Systemic Signaling in Plants

(2016) Simon Gilroy et al.   PLANT PHYSIOLOGY

Overexpression of CuZnSOD and APX enhance salt stress tolerance in sweet potato

(2016) Hui Yan et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A combination of genome-wide association and transcriptome analysis reveals candidate genes controlling harvest index-related traits in Brassica napus

(2016) Kun Lu et al.   Scientific Reports

A Genome-Wide Analysis Reveals Stress and Hormone Responsive Patterns of TIFY Family Genes in Brassica rapa

(2016) Gopal Saha et al.   Frontiers in Plant Science

A peroxisomal APX from Puccinellia tenuiflora improves the abiotic stress tolerance of transgenic Arabidopsis thaliana through decreasing of H2O2 accumulation

(2015) Qingjie Guan et al.   JOURNAL OF PLANT PHYSIOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Analysis of Interspecific Hybrid betweenBrassica napusandB. rapaReveals Heterosis for Oil Rape Improvement

(2015) Jinfang Zhang et al.   International Journal of Genomics

Patterns of Evolutionary Conservation of Ascorbic Acid-Related Genes Following Whole-Genome Triplication in Brassica rapa

(2015) Weike Duan et al.   Genome Biology and Evolution

Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence

(2014) T. Arias et al.   AMERICAN JOURNAL OF BOTANY

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Increased expression of native cytosolic Cu/Zn superoxide dismutase and ascorbate peroxidase improves tolerance to oxidative and chilling stresses in cassava (Manihot esculenta Crantz)

(2014) Jia Xu et al.   BMC PLANT BIOLOGY

SMART: recent updates, new developments and status in 2015

(2014) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Genome triplication drove the diversification of Brassica plants

(2014) Feng Cheng et al.   Horticulture Research

Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa

(2013) Chaobo Tong et al.   BMC GENOMICS

Cold Signaling and Cold Response in Plants

(2013) Kenji Miura et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

BRAD, the genetics and genomics database for Brassica plants

(2011) Feng Cheng et al.   BMC PLANT BIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Plant responses to cold: transcriptome analysis of wheat

(2010) Mark O. Winfield et al.   PLANT BIOTECHNOLOGY JOURNAL

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH