EasyMicroPlot: An Efficient and Convenient R Package in Microbiome Downstream Analysis and Visualization for Clinical Study

animalcules: interactive microbiome analytics and visualization in R

(2021) Yue Zhao et al.   Microbiome

Genomic and functional characterization of a mucosal symbiont involved in early-stage colorectal cancer

(2021) Melissa C. Kordahi et al.   Cell Host & Microbe

Gut microbiota in human metabolic health and disease

(2020) Yong Fan et al.   NATURE REVIEWS MICROBIOLOGY

Dietary fruit and vegetable intake, gut microbiota, and type 2 diabetes: results from two large human cohort studies

(2020) Zengliang Jiang et al.   BMC Medicine

Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks

(2019) Pajau Vangay et al.   GigaScience

Gut microbiota–bile acid–interleukin-22 axis orchestrates polycystic ovary syndrome

(2019) Xinyu Qi et al.   NATURE MEDICINE

Meta-omics analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism

(2019) Jonathan Scheiman et al.   NATURE MEDICINE

The Microbiota-Gut-Brain Axis

(2019) John F. Cryan et al.   PHYSIOLOGICAL REVIEWS

Gut Microbiota as a Subjective Measurement for Auxiliary Diagnosis of Insomnia Disorder

(2019) Bingdong Liu et al.   Frontiers in Microbiology

Microbial Contribution to the Human Metabolome: Implications for Health and Disease

(2019) William Van Treuren et al.   Annual Review of Pathology-Mechanisms of Disease

Best practices for analysing microbiomes

(2018) Rob Knight et al.   NATURE REVIEWS MICROBIOLOGY

Shifts on Gut Microbiota Associated to Mediterranean Diet Adherence and Specific Dietary Intakes on General Adult Population

(2018) Izaskun Garcia-Mantrana et al.   Frontiers in Microbiology

Gut microbiome analysis as a tool towards targeted non-invasive biomarkers for early hepatocellular carcinoma

(2018) Zhigang Ren et al.   GUT

Regional variation limits applications of healthy gut microbiome reference ranges and disease models

(2018) Yan He et al.   NATURE MEDICINE

Linking gut microbiota, metabolic syndrome and economic status based on a population-level analysis

(2018) Yan He et al.   Microbiome

Influence of diet on the gut microbiome and implications for human health

(2017) Rasnik K. Singh et al.   Journal of Translational Medicine

Salt-responsive gut commensal modulates TH17 axis and disease

(2017) Nicola Wilck et al.   NATURE

A clinician's guide to microbiome analysis

(2017) Marcus J. Claesson et al.   Nature Reviews Gastroenterology & Hepatology

The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young

(2017) Gaorui Bian et al.   mSphere

Gut Microbiota and Extreme Longevity

(2016) Elena Biagi et al.   CURRENT BIOLOGY

The gut microbiota and host health: a new clinical frontier

(2015) Julian R Marchesi et al.   GUT

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH