‘SRS’ R Package and ‘q2-srs’ QIIME 2 Plugin: Normalization of Microbiome Data Using Scaling with Ranked Subsampling (SRS)

Relative Abundances of Species or Sequence Variants Can Be Misleading: Soil Fungal Communities as an Example

(2021) Lukas Beule et al.   Microorganisms

Structure and Long-Term Stability of the Microbiome in Diverse Diatom Cultures

(2021) Marcelo Malisano Barreto Filho et al.   Microbiology Spectrum

AMDB: a database of animal gut microbial communities with manually curated metadata

(2021) Junwon Yang et al.   NUCLEIC ACIDS RESEARCH

Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities

(2020) Lukas Beule et al.   PeerJ

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Ecology and evolution of seafloor and subseafloor microbial communities

(2018) William D. Orsi   NATURE REVIEWS MICROBIOLOGY

Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research

(2018) Patrick D. Schloss   mBio

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE