A new subspecies of Stellaria alsine (Caryophyllaceae) from Yakushima, Japan

Validation of Hosta alata (Asparagaceae) as a new species and its phylogenetic affinity

(2021) Tetsukazu Yahara et al.   PhytoKeys

Complementary combination of multiplex high‐throughput DNA sequencing for molecular phylogeny

(2021) Yoshihisa Suyama et al.   ECOLOGICAL RESEARCH

Cryptocarya kaengkrachanensis, a new species of Lauraceae from Kaeng Krachan National Park, southwest Thailand

(2020) Meng Zhang et al.   PhytoKeys

Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea

(2020) Joeri S. Strijk et al.   PLoS One

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Taxonomic Observations Within Stellaria (Caryophyllaceae): Insights from Ecology, Geography, Morphology, and Phylogeny Suggest Widespread Parallelism in Starworts and Erode Previous Infrageneric Classifications

(2019) Mathew T. Sharples   SYSTEMATIC BOTANY

A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences

(2018) Hoang Thi Binh et al.   PhytoKeys

Lecanorchis tabugawaensis (Orchidaceae, Vanilloideae), a new mycoheterotrophic plant from Yakushima Island, Japan

(2016) Kenji Suetsugu et al.   PhytoKeys

MIG-seq: an effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform

(2015) Yoshihisa Suyama et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Haplopteris yakushimensis (Pteridaceae, Vittarioideae), a new species from Yakushima Island, Japan

(2014) Cheng-Wei Chen et al.   Phytotaxa

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants

(2013) Akifumi S. Tanabe et al.   PLoS One

Uninformative polymorphisms bias genome scans for signatures of selection

(2012) Marius Roesti et al.   BMC EVOLUTIONARY BIOLOGY

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data

(2011) AKIFUMI S. TANABE   Molecular Ecology Resources

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS