Metagenomics analysis of the fecal microbiota in Ring-necked pheasants (Phasianus colchicus) and Green pheasants (Phasianus versicolor) using next generation sequencing

Metagenomic analysis reveals the microbiome and resistome in migratory birds

(2020) Jian Cao et al.   Microbiome

Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System

(2017) Aaron A. Best et al.   Frontiers in Microbiology

Age-related differences in the respiratory microbiota of chickens

(2017) Laura Glendinning et al.   PLoS One

Comprehensive Molecular Characterization of Bacterial Communities in Feces of Pet Birds Using 16S Marker Sequencing

(2016) Jose F. Garcia-Mazcorro et al.   MICROBIAL ECOLOGY

Microbiome-wide association studies link dynamic microbial consortia to disease

(2016) Jack A. Gilbert et al.   NATURE

Molecular analysis of the caecal and tracheal microbiome of heat-stressed broilers supplemented with prebiotic and probiotic

(2015) Muhammad U. Sohail et al.   AVIAN PATHOLOGY

Microbial communities present in the lower respiratory tract of clinically healthy birds in Pakistan

(2015) Muhammad Zubair Shabbir et al.   POULTRY SCIENCE

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

(2015) Francesco Asnicar et al.   PeerJ

Faecal lactobacilli from common pheasants and their characterization

(2014) A. K. ričakova et al.   African Journal of Microbiology Research

A small molecule binding HMGB1 and HMGB2 inhibits microglia-mediated neuroinflammation

(2014) Sanghee Lee et al.   Nature Chemical Biology

Body Weight Selection Affects Quantitative Genetic Correlated Responses in Gut Microbiota

(2014) He Meng et al.   PLoS One

Characterizing the avian gut microbiota: membership, driving influences, and potential function

(2014) David W. Waite et al.   Frontiers in Microbiology

Human Microbiota Characterization in the Course of Renal Transplantation

(2013) W. F. Fricke et al.   AMERICAN JOURNAL OF TRANSPLANTATION

Prevalence of Campylobacter in Wild Birds of the Mid-Atlantic Region, USA

(2013) Judith I. Keller et al.   JOURNAL OF WILDLIFE DISEASES

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Co-infection of broilers with Ornithobacterium rhinotracheale and H9N2 avian influenza virus

(2012) Qing Pan et al.   BMC Veterinary Research

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Novel Bacterial Taxa in the Human Microbiome

(2012) Kristine M. Wylie et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites

(2011) Xuan Xiao et al.   PLoS One

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Characterization of the gastrointestinal yeast microbiota of cockatiels (Nymphicus hollandicus): a potential hazard to human health

(2010) R. S. N. Brilhante et al.   JOURNAL OF MEDICAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Identification of species by multiplex analysis of variable-length sequences

(2010) Filipe Pereira et al.   NUCLEIC ACIDS RESEARCH

Molecular characterization of the cloacal microbiota of wild and captive parrots

(2010) Panagiotis G. Xenoulis et al.   VETERINARY MICROBIOLOGY

Molecular Epidemiology and Characterization of Campylobacter spp. Isolated from Wild Bird Populations in Northern England

(2009) L. A. Hughes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial pathogens in wild birds: a review of the frequency and effects of infection

(2009) Clare McW. H. Benskin et al.   BIOLOGICAL REVIEWS

What do we mean when we refer toBacteroidetes populations in the human gastrointestinal microbiota?

(2009) Lesley Hoyles et al.   FEMS MICROBIOLOGY LETTERS

Effects of zinc bacitracin, bird age and access to range on bacterial microbiota in the ileum and caeca of broiler chickens

(2008) J. Gong et al.   JOURNAL OF APPLIED MICROBIOLOGY