Phage-Mediated Explosive Cell Lysis Induces the Formation of a Different Type of O-IMV in Shewanella vesiculosa M7T

RNA release via membrane vesicles in Pseudomonas aeruginosa PAO1 is associated with the growth phase

(2021) Carla Pérez‐Cruz et al.   ENVIRONMENTAL MICROBIOLOGY

Outer Membrane Vesicles of Gram-Negative Bacteria: An Outlook on Biogenesis

(2021) Eric Daniel Avila-Calderón et al.   Frontiers in Microbiology

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Bacteriophage infection of Escherichia coli leads to the formation of membrane vesicles via both explosive cell lysis and membrane blebbing

(2021) Pappu K. Mandal et al.   MICROBIOLOGY-SGM

Cracking Open Bacterial Membrane Vesicles

(2020) Toshiki Nagakubo et al.   Frontiers in Microbiology

Membrane Vesicle Production as a Bacterial Defense Against Stress

(2020) Negar Mozaheb et al.   Frontiers in Microbiology

Analysis of Pseudomonas aeruginosa biofilm membrane vesicles supports multiple mechanisms of biogenesis

(2019) Adam C. Cooke et al.   PLoS One

Desulfovibrio alaskensis prophages and their possible involvement in the horizontal transfer of genes by outer membrane vesicles

(2019) Josicelli Souza Crispim et al.   GENE

Scaling read aligners to hundreds of threads on general-purpose processors

(2018) Ben Langmead et al.   BIOINFORMATICS

For the greater good: Programmed cell death in bacterial communities

(2018) Stijn H. Peeters et al.   MICROBIOLOGICAL RESEARCH

Mobile Genetic Elements Associated with Antimicrobial Resistance

(2018) Sally R. Partridge et al.   CLINICAL MICROBIOLOGY REVIEWS

Antibiotics stimulate vesicles formation in Staphylococcus aureus in a phage-dependent and independent fashion and via different routes

(2018) Federica Andreoni et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The SOS System: A Complex and Tightly Regulated Response to DNA Damage

(2018) Katarzyna H. Maslowska et al.   ENVIRONMENTAL AND MOLECULAR MUTAGENESIS

Types and origins of bacterial membrane vesicles

(2018) Masanori Toyofuku et al.   NATURE REVIEWS MICROBIOLOGY

Membrane vesicle secretion and prophage induction in multidrug-resistant Stenotrophomonas maltophilia in response to ciprofloxacin stress

(2017) Simon Devos et al.   ENVIRONMENTAL MICROBIOLOGY

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Outer Membrane Vesicles (OMVs) of Gram-negative Bacteria: A Perspective Update

(2017) Arif Tasleem Jan   Frontiers in Microbiology

Bacterial membrane vesicles transport their DNA cargo into host cells

(2017) Natalie J. Bitto et al.   Scientific Reports

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

(2016) Heng Li   BIOINFORMATICS

Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates

(2016) Steven J Biller et al.   ISME Journal

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms

(2016) Lynne Turnbull et al.   Nature Communications

Fluoroquinolone induction of phage-mediated gene transfer in multidrug-resistant Salmonella

(2015) Bradley L. Bearson et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions

(2015) Carmen Schwechheimer et al.   NATURE REVIEWS MICROBIOLOGY

Outer-Inner Membrane Vesicles Naturally Secreted by Gram-Negative Pathogenic Bacteria

(2015) Carla Pérez-Cruz et al.   PLoS One

Iron Triggers λSo Prophage Induction and Release of Extracellular DNA in Shewanella oneidensis MR-1 Biofilms

(2014) Lucas Binnenkade et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

(2014) Hongshan Jiang et al.   BMC BIOINFORMATICS

Efficient quantification and characterization of bacterial outer membrane derived nano-particles with flow cytometric analysis

(2014) Andreas Wieser et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Streptococcus mutans Extracellular DNA Is Upregulated during Growth in Biofilms, Actively Released via Membrane Vesicles, and Influenced by Components of the Protein Secretion Machinery

(2014) S. Liao et al.   JOURNAL OF BACTERIOLOGY

Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions

(2014) Arun M. Nanda et al.   JOURNAL OF BACTERIOLOGY

Biogenesis and multifaceted roles of outer membrane vesicles from Gram-negative bacteria

(2014) H. M. Kulkarni et al.   MICROBIOLOGY-SGM

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Bacterial Vesicles in Marine Ecosystems

(2014) S. J. Biller et al.   SCIENCE

The lethal cargo of Myxococcus xanthus outer membrane vesicles

(2014) James E. Berleman et al.   Frontiers in Microbiology

New Type of Outer Membrane Vesicle Produced by the Gram-Negative Bacterium Shewanella vesiculosa M7T: Implications for DNA Content

(2013) Carla Pérez-Cruz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Analysis of SOS-Induced Spontaneous Prophage Induction in Corynebacterium glutamicum at the Single-Cell Level

(2013) A. M. Nanda et al.   JOURNAL OF BACTERIOLOGY

Stress-Induced Outer Membrane Vesicle Production by Pseudomonas aeruginosa

(2013) I. A. MacDonald et al.   JOURNAL OF BACTERIOLOGY

DNA-bearing membrane vesicles produced byAhrensia kielensisandPseudoalteromonas marina

(2013) Sylvia Hagemann et al.   JOURNAL OF BASIC MICROBIOLOGY

Identification of Proteins Associated with the Pseudomonas aeruginosa Biofilm Extracellular Matrix

(2012) Masanori Toyofuku et al.   JOURNAL OF PROTEOME RESEARCH

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Horizontal Transfer of the OXA-24 Carbapenemase Gene via Outer Membrane Vesicles: a New Mechanism of Dissemination of Carbapenem Resistance Genes in Acinetobacter baumannii

(2011) Carlos Rumbo et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Variation of Physiochemical Properties and Cell Association Activity of Membrane Vesicles with Growth Phase in Pseudomonas aeruginosa

(2010) Y. Tashiro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Metabolic stress-induced programmed cell death in Xanthomonas

(2010) Surbhi Wadhawan et al.   FEMS MICROBIOLOGY LETTERS

Membrane Vesicles: A Common Feature in the Extracellular Matter of Cold-Adapted Antarctic Bacteria

(2010) Alina Frias et al.   MICROBIAL ECOLOGY

Shewanella vesiculosa sp. nov., a psychrotolerant bacterium isolated from an Antarctic coastal area

(2009) N. Bozal et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Proteomics in gram-negative bacterial outer membrane vesicles

(2008) Eun-Young Lee et al.   MASS SPECTROMETRY REVIEWS

Temperate bacteriophage ΦO18P from an Aeromonas media isolate: Characterization and complete genome sequence

(2007) Frauke Beilstein et al.   VIROLOGY