Hybrid de novo Genome Assembly of Erwinia sp. E602 and Bioinformatic Analysis Characterized a New Plasmid-Borne lac Operon Under Positive Selection

Escherichia coli EC93 deploys two plasmid-encoded class I contact-dependent growth inhibition systems for antagonistic bacterial interactions

(2021) Marcus Wäneskog et al.   Microbial Genomics

Historical Contingency Causes Divergence in Adaptive Expression of the lac Operon

(2021) Kedar Karkare et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparison of De Novo Assembly Strategies for Bacterial Genomes

(2021) Pengfei Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Selective Advantage of the lac Operon for Escherichia coli Is Conditional on Diet and Microbiota Composition

(2021) Catarina Pinto et al.   Frontiers in Microbiology

A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries

(2020) Cedoljub Bundalovic-Torma et al.   PLoS Computational Biology

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

(2019) Nicola De Maio et al.   Microbial Genomics

Mega-plasmid found worldwide confers multiple antimicrobial resistance in Salmonella Infantis of broiler origin in Russia

(2019) Alexandra N. Bogomazova et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes

(2018) Blanca Taboada et al.   BIOINFORMATICS

Purification, characterization, and gene cloning of a new cold-adapted β-galactosidase from Erwinia sp. E602 isolated in northeast China

(2018) Yu Xia et al.   JOURNAL OF DAIRY SCIENCE

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation

(2018) Han Zhang et al.   NUCLEIC ACIDS RESEARCH

The lactose operon from Lactobacillus casei is involved in the transport and metabolism of the human milk oligosaccharide core-2 N-acetyllactosamine

(2018) Gonzalo N. Bidart et al.   Scientific Reports

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Acquisition of the lac operon by Salmonella enterica

(2015) Susan R. Leonard et al.   BMC MICROBIOLOGY

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Regulation of gene expression: Cryptic β-glucoside (bgl) operon of Escherichia coli as a paradigm

(2015) Dharmesh Harwani   BRAZILIAN JOURNAL OF MICROBIOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

(2014) Molly K Gibson et al.   ISME Journal

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

lac operon induction in Escherichia coli: Systematic comparison of IPTG and TMG induction and influence of the transacetylase LacA

(2011) Anja Marbach et al.   JOURNAL OF BIOTECHNOLOGY