Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy test

(2021) Taylor M. Lagler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Mapping effector genes at lupus GWAS loci using promoter Capture-C in follicular helper T cells

(2020) Chun Su et al.   Nature Communications

Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations

(2020) Ming-Huei Chen et al.   CELL

The Polygenic and Monogenic Basis of Blood Traits and Diseases

(2020) Dragana Vuckovic et al.   CELL

Unraveling Hematopoiesis through the Lens of Genomics

(2020) L. Alexander Liggett et al.   CELL

Cell-type-specific 3D epigenomes in the developing human cortex

(2020) Michael Song et al.   NATURE

The GTEx Consortium atlas of genetic regulatory effects across human tissues

(2020)   SCIENCE

Common variants in signaling transcription-factor-binding sites drive phenotypic variability in red blood cell traits

(2020) Avik Choudhuri et al.   NATURE GENETICS

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens

(2019) Molly Gasperini et al.   CELL

Interrogation of human hematopoiesis at single-cell and single-variant resolution

(2019) Jacob C. Ulirsch et al.   NATURE GENETICS

Neutrophil Functions in Immunodeficiency Due to DOCK8 Deficiency

(2019) Amarilla B. Mandola et al.   IMMUNOLOGICAL INVESTIGATIONS

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

(2019) Ivan Juric et al.   PLoS Computational Biology

A compendium of promoter-centered long-range chromatin interactions in the human genome

(2019) Inkyung Jung et al.   NATURE GENETICS

Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations

(2019) Charles P. Fulco et al.   NATURE GENETICS

Gene regulation in the 3D genome

(2018) Yun Li et al.   HUMAN MOLECULAR GENETICS

Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection

(2018) Antonio F. Pardiñas et al.   NATURE GENETICS

Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types

(2018) Hilary K. Finucane et al.   NATURE GENETICS

Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor

(2017) Kevin Litchfield et al.   NATURE GENETICS

Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements

(2017) Maxwell R Mumbach et al.   NATURE GENETICS

The genetics of platelet count and volume in humans

(2017) John D. Eicher et al.   PLATELETS

Three-dimensional genome architecture and emerging technologies: looping in disease

(2017) Arpit Mishra et al.   Genome Medicine

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

(2016) Biola M. Javierre et al.   CELL

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease

(2016) William J. Astle et al.   CELL

Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq

(2016) Rongxin Fang et al.   CELL RESEARCH

The Role of the Transcription Factor Ets1 in Lupus and Other Autoimmune Diseases

(2016) Lee Ann Garrett-Sinha et al.   CRITICAL REVIEWS IN IMMUNOLOGY

A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome

(2016) Anthony D. Schmitt et al.   Cell Reports

Haemopedia: An Expression Atlas of Murine Hematopoietic Cells

(2016) Carolyn A. de Graaf et al.   Stem Cell Reports

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements

(2015) Stefan Schoenfelder et al.   GENOME RESEARCH

The Hitchhiker’s guide to Hi-C analysis: Practical guidelines

(2015) Bryan R. Lajoie et al.   METHODS

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C

(2015) Borbala Mifsud et al.   NATURE GENETICS

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

(2015) et al.   SCIENCE

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

The structure of FMNL2–Cdc42 yields insights into the mechanism of lamellipodia and filopodia formation

(2015) Sonja Kühn et al.   Nature Communications

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Transcriptional diversity during lineage commitment of human blood progenitors

(2014) L. Chen et al.   SCIENCE

Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes

(2013) Warren A. Whyte et al.   CELL

Super-Enhancers in the Control of Cell Identity and Disease

(2013) Denes Hnisz et al.   CELL

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS