Optimizing network propagation for multi-omics data integration

Characterization of the prognostic values and response to immunotherapy/chemotherapy of Krüppel‐like factors in prostate cancer

(2020) Jialin Meng et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Network-Based Single-Cell RNA-Seq Data Imputation Enhances Cell Type Identification

(2020) Maryam Zand et al.   Genes

NetCore: a network propagation approach using node coreness

(2020) Gal Barel et al.   NUCLEIC ACIDS RESEARCH

Network integration and modelling of dynamic drug responses at multi-omics levels

(2020) Nathalie Selevsek et al.   Communications Biology

Comparative Analysis of Normalization Methods for Network Propagation

(2019) Hadas Biran et al.   Frontiers in Genetics

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

(2018) David van Dijk et al.   CELL

Network propagation: a universal amplifier of genetic associations

(2017) Lenore Cowen et al.   NATURE REVIEWS GENETICS

Specific role of RhoC in tumor invasion and metastasis

(2017) Sarah Lang et al.   Oncotarget

Network propagation in the cytoscape cyberinfrastructure

(2017) Daniel E. Carlin et al.   PLoS Computational Biology

On the Dependency of Cellular Protein Levels on mRNA Abundance

(2016) Yansheng Liu et al.   CELL

Immunological and Functional Characterization of RhoGDI3 and Its Molecular Targets RhoG and RhoB in Human Pancreatic Cancerous and Normal Cells

(2016) Mercedes Piedad de León-Bautista et al.   PLoS One

Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats

(2015) Alessandro Ori et al.   Cell Systems

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Integrative approaches for predicting protein function and prioritizing genes for complex phenotypes using protein interaction networks

(2013) X. Ma et al.   BRIEFINGS IN BIOINFORMATICS

Network-based stratification of tumor mutations

(2013) Matan Hofree et al.   NATURE METHODS

AgeFactDB—the JenAge Ageing Factor Database—towards data integration in ageing research

(2013) Rolf Hühne et al.   NUCLEIC ACIDS RESEARCH

Path lengths in protein-protein interaction networks and biological complexity

(2011) Ke Xu et al.   PROTEOMICS

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

Associating Genes and Protein Complexes with Disease via Network Propagation

(2010) Oron Vanunu et al.   PLoS Computational Biology

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Transposed Markov Matrix as a New Decision Tool of How to Choose among Competing Investment Options in Academic Medicine

(2008) Amnon Sonnenberg   Computational and Mathematical Methods in Medicine