Mapping of Nonhomologous End Joining-Mediated Integration Facilitates Genome-Scale Trackable Mutagenesis in Yarrowia lipolytica

Development of a CRISPR/Cas9-mediated homology-independent tool for targeted genome integration in Yarrowia lipolytica

(2021) Zhiyong Cui et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Establishment of genomic library technology mediated by non-homologous end joining mechanism in Yarrowia lipolytica

(2021) Qiuyan Bai et al.   Science China-Life Sciences

High-throughput insertional mutagenesis reveals novel targets for enhancing lipid accumulation in Nannochloropsis oceanica

(2021) Christian Südfeld et al.   METABOLIC ENGINEERING

Yarrowia lipolytica as an emerging biotechnological chassis for functional sugars biosynthesis

(2020) Muhammad Bilal et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

High production of triterpenoids in Yarrowia lipolytica through manipulation of lipid components

(2020) Jin-Lai Zhang et al.   Biotechnology for Biofuels

The Chromatin Response to Double-Strand DNA Breaks and Their Repair

(2020) Radoslav Aleksandrov et al.   Cells

Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations

(2019) Gaetano Ivan Dellino et al.   NATURE GENETICS

Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica

(2019) Cory Schwartz et al.   METABOLIC ENGINEERING

Optimizing Oleaginous Yeast Cell Factories for Flavonoids and Hydroxylated Flavonoids Biosynthesis

(2019) Yongkun Lv et al.   ACS Synthetic Biology

Engineering 4-coumaroyl-CoA derived polyketide production in Yarrowia lipolytica through a β-oxidation mediated strategy

(2019) Claire M. Palmer et al.   METABOLIC ENGINEERING

Major Determinants of Nucleosome Positioning

(2018) Răzvan V. Chereji et al.   BIOPHYSICAL JOURNAL

Production of oils and fats by oleaginous microorganisms with an emphasis given to the potential of the nonconventional yeast Yarrowia lipolytica

(2018) E. Carsanba et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Functional genomics for the oleaginous yeast Yarrowia lipolytica

(2018) Kurt Patterson et al.   METABOLIC ENGINEERING

Genome-Wide Determination of Gene Essentiality by Transposon Insertion Sequencing in Yeast Pichia pastoris

(2018) Jinxiang Zhu et al.   Scientific Reports

Homology‐independent genome integration enables rapid library construction for enzyme expression and pathway optimization in Yarrowia lipolytica

(2018) Zhiyong Cui et al.   BIOTECHNOLOGY AND BIOENGINEERING

Endogenous DNA Double-Strand Breaks during DNA Transactions: Emerging Insights and Methods for Genome-Wide Profiling

(2018) Britta A. M. Bouwman et al.   Genes

Lipid engineering combined with systematic metabolic engineering of Saccharomyces cerevisiae for high-yield production of lycopene

(2018) Tian Ma et al.   METABOLIC ENGINEERING

Improvement of yeast tolerance to acetic acid through Haa1 transcription factor engineering: towards the underlying mechanisms

(2017) Steve Swinnen et al.   Microbial Cell Factories

Omics analysis of acetic acid tolerance in Saccharomyces cerevisiae

(2017) Peng Geng et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Functional mapping of yeast genomes by saturated transposition

(2017) Agnès H Michel et al.   eLife

Discovery of Several Novel Targets that Enhance β-Carotene Production in Saccharomyces cerevisiae

(2017) Jia Li et al.   Frontiers in Microbiology

Synthetic biology and molecular genetics in non-conventional yeasts: Current tools and future advances

(2016) James M. Wagner et al.   FUNGAL GENETICS AND BIOLOGY

GeneBase 1.1: a tool to summarize data from NCBI gene datasets and its application to an update of human gene statistics

(2016) Allison Piovesan et al.   Database-The Journal of Biological Databases and Curation

Sustainable source of omega-3 eicosapentaenoic acid from metabolically engineered Yarrowia lipolytica: from fundamental research to commercial production

(2015) Dongming Xie et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A brief review of nucleosome structure

(2015) Amber R. Cutter et al.   FEBS LETTERS

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

(2015) Alicia N. Schep et al.   GENOME RESEARCH

Extreme Diversity in the Regulation of Ndt80-Like Transcription Factors in Fungi

(2015) Margaret E. Katz et al.   G3-Genes Genomes Genetics

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

Nucleosome positioning in yeasts: methods, maps, and mechanisms

(2014) Corinna Lieleg et al.   CHROMOSOMA

Identifying and mitigating bias in next-generation sequencing methods for chromatin biology

(2014) Clifford A. Meyer et al.   NATURE REVIEWS GENETICS

Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production

(2014) John Blazeck et al.   Nature Communications

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Ubp2 Regulates Rsp5 Ubiquitination Activity In Vivo and In Vitro

(2013) Mandy H. Y. Lam et al.   PLoS One

piggyBac transposase tools for genome engineering

(2013) X. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Mechanism of Double-Strand DNA Break Repair by the Nonhomologous DNA End-Joining Pathway

(2010) Michael R. Lieber   Annual Review of Biochemistry

Systematic identification of fragile sites via genome-wide location analysis of γ-H2AX

(2010) Rachel K Szilard et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo

(2010) S. Gangadharan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Test of the Barrier Nucleosome Model for Statistical Positioning of Nucleosomes Up- and Downstream of Transcription Start Sites

(2010) Wolfram Möbius et al.   PLoS Computational Biology

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Interaction of the Deubiquitinating Enzyme Ubp2 and the E3 Ligase Rsp5 Is Required for Transporter/Receptor Sorting in the Multivesicular Body Pathway

(2009) Mandy H. Y. Lam et al.   PLoS One

Combinatorial engineering of microbes for optimizing cellular phenotype

(2008) Christine Nicole S Santos et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH