Precise measurements of chromatin diffusion dynamics by modeling using Gaussian processes
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Title
Precise measurements of chromatin diffusion dynamics by modeling using Gaussian processes
Authors
Keywords
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Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-10-26
DOI
10.1038/s41467-021-26466-7
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Note: Only part of the references are listed.- Chromosome dynamics during interphase: a biophysical perspective
- (2020) Maxime MC Tortora et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
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- (2019) Naor Granik et al. BIOPHYSICAL JOURNAL
- Chromatin structure dynamics during the mitosis-to-G1 phase transition
- (2019) Haoyue Zhang et al. NATURE
- Single trajectory characterization via machine learning
- (2019) Gorka Muñoz-Gil et al. NEW JOURNAL OF PHYSICS
- Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
- (2018) Bo Gu et al. SCIENCE
- A pathway for mitotic chromosome formation
- (2018) Johan H. Gibcus et al. SCIENCE
- Robust model-based analysis of single-particle tracking experiments with Spot-On
- (2018) Anders S Hansen et al. eLife
- Bayesian model selection with fractional Brownian motion
- (2018) Jens Krog et al. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT
- Bayesian analysis of single-particle tracking data using the nested-sampling algorithm: maximum-likelihood model selection applied to stochastic-diffusivity data
- (2018) Samudrajit Thapa et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells
- (2017) Horng D. Ou et al. SCIENCE
- Mitotic transcription and waves of gene reactivation during mitotic exit
- (2017) Katherine C. Palozola et al. SCIENCE
- Visualization of Chromatin Decompaction and Break Site Extrusion as Predicted by Statistical Polymer Modeling of Single-Locus Trajectories
- (2017) Assaf Amitai et al. Cell Reports
- Non-Brownian diffusion in lipid membranes: Experiments and simulations
- (2016) R. Metzler et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- A role for mitotic bookmarking of SOX2 in pluripotency and differentiation
- (2016) Cédric Deluz et al. GENES & DEVELOPMENT
- Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network
- (2016) Nicola Festuccia et al. NATURE CELL BIOLOGY
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- The Role of Chromosome Domains in Shaping the Functional Genome
- (2015) Tom Sexton et al. CELL
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- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Optimal estimation of diffusion coefficients from single-particle trajectories
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- DNA Dynamics during Early Double-Strand Break Processing Revealed by Non-Intrusive Imaging of Living Cells
- (2014) Hicham Saad et al. PLoS Genetics
- A Quantitative Analysis of Current Practices in Optical Flow Estimation and the Principles Behind Them
- (2013) Deqing Sun et al. INTERNATIONAL JOURNAL OF COMPUTER VISION
- Polymer model with long-range interactions: Analysis and applications to the chromatin structure
- (2013) A. Amitai et al. PHYSICAL REVIEW E
- Anomalous transport in the crowded world of biological cells
- (2013) Felix Höfling et al. REPORTS ON PROGRESS IN PHYSICS
- Organization of the Mitotic Chromosome
- (2013) N. Naumova et al. SCIENCE
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
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- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Icy: an open bioimage informatics platform for extended reproducible research
- (2012) Fabrice de Chaumont et al. NATURE METHODS
- Live-Cell Chromosome Dynamics and Outcome of X Chromosome Pairing Events during ES Cell Differentiation
- (2011) Osamu Masui et al. CELL
- Single particle tracking in systems showing anomalous diffusion: the role of weak ergodicity breaking
- (2011) Stas Burov et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Fractional Brownian motion and motion governed by the fractional Langevin equation in confined geometries
- (2010) Jae-Hyung Jeon et al. PHYSICAL REVIEW E
- Subdiffusive motion of a polymer composed of subdiffusive monomers
- (2010) Stephanie C. Weber et al. PHYSICAL REVIEW E
- Mean square displacement analysis of single-particle trajectories with localization error: Brownian motion in an isotropic medium
- (2010) Xavier Michalet PHYSICAL REVIEW E
- How a protein searches for its site on DNA: the mechanism of facilitated diffusion
- (2009) Leonid Mirny et al. Journal of Physics A-Mathematical and Theoretical
- Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells
- (2009) I. Bronstein et al. PHYSICAL REVIEW LETTERS
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