Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes

Evidence for non‐methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales

(2020) Laura A. Zinke et al.   ENVIRONMENTAL MICROBIOLOGY

Genome of the candidate phylum Aminicenantes bacterium from a deep subsurface thermal aquifer revealed its fermentative saccharolytic lifestyle

(2019) Vitaly V. Kadnikov et al.   EXTREMOPHILES

An evolving view of methane metabolism in the Archaea

(2019) Paul N. Evans et al.   NATURE REVIEWS MICROBIOLOGY

Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake

(2019) Antti J Rissanen et al.   FEMS MICROBIOLOGY LETTERS

Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths

(2019) Eric R. Johnston et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments

(2018) Stefan Spring et al.   ENVIRONMENTAL MICROBIOLOGY

Effect of pressure and temperature on anaerobic methanotrophic activities of a highly enriched ANME-2a community

(2018) Susma Bhattarai et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes

(2018) Joel A Boyd et al.   NUCLEIC ACIDS RESEARCH

Physicochemical Drivers of Microbial Community Structure in Sediments of Lake Hazen, Nunavut, Canada

(2018) Matti O. Ruuskanen et al.   Frontiers in Microbiology

Host-linked soil viral ecology along a permafrost thaw gradient

(2018) Joanne B. Emerson et al.   Nature Microbiology

Genome-centric view of carbon processing in thawing permafrost

(2018) Ben J. Woodcroft et al.   NATURE

Microbial organic matter degradation potential in Baltic Sea sediments influenced by depositional conditions and in situ geochemistry

(2018) Laura A. Zinke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Syntrophobacteraceae -affiliated species are major propionate-degrading sulfate reducers in paddy soil

(2017) Pengfei Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Is the subarctic landscape still a carbon sink? Evidence from a detailed catchment balance

(2016) Erik J. Lundin et al.   GEOPHYSICAL RESEARCH LETTERS

High temporal variability in airborne bacterial diversity and abundance inside single-family residences

(2016) J. B. Emerson et al.   INDOOR AIR

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

Climate-sensitive northern lakes and ponds are critical components of methane release

(2016) Martin Wik et al.   Nature Geoscience

Large contribution to inland water CO2 and CH4 emissions from very small ponds

(2016) Meredith A. Holgerson et al.   Nature Geoscience

Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well

(2016) Steven J. Robbins et al.   Frontiers in Microbiology

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

(2016) Inka Vanwonterghem et al.   Nature Microbiology

Arctic lakes are continuous methane sources to the atmosphere under warming conditions

(2015) Zeli Tan et al.   Environmental Research Letters

Impacts of Flood Damage on Airborne Bacteria and Fungi in Homes after the 2013 Colorado Front Range Flood

(2015) Joanne B. Emerson et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

(2015) Itai Sharon et al.   GENOME RESEARCH

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Climate-forced changes in available energy and methane bubbling from subarctic lakes

(2015) Brett F. Thornton et al.   GEOPHYSICAL RESEARCH LETTERS

Global dispersion and local diversification of the methane seep microbiome

(2015) S. Emil Ruff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake

(2014) Esther A. Gies et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

(2014) Guillaume Borrel et al.   BMC GENOMICS

Energy input is primary controller of methane bubbling in subarctic lakes

(2014) Martin Wik et al.   GEOPHYSICAL RESEARCH LETTERS

A global inventory of lakes based on high-resolution satellite imagery

(2014) Charles Verpoorter et al.   GEOPHYSICAL RESEARCH LETTERS

A simple headspace equilibration method for measuring dissolved methane

(2014) Cédric Magen et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Methane dynamics regulated by microbial community response to permafrost thaw

(2014) Carmody K. McCalley et al.   NATURE

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Partitioning pathways of CO2 production in peatlands with stable carbon isotopes

(2012) J. Elizabeth Corbett et al.   BIOGEOCHEMISTRY

Lakes and reservoirs as regulators of carbon cycling and climate

(2011) Lars J. Tranvik et al.   LIMNOLOGY AND OCEANOGRAPHY

Freshwater Methane Emissions Offset the Continental Carbon Sink

(2011) D. Bastviken et al.   SCIENCE

Methane emissions from permafrost thaw lakes limited by lake drainage

(2011) J. van Huissteden et al.   Nature Climate Change

Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation

(2010) Jessica R. Sieber et al.   Annual Review of Microbiology

Implications of temperature and sediment characteristics on methane formation and oxidation in lake sediments

(2010) Nguyen Thanh Duc et al.   BIOGEOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Wetland development, permafrost history and nutrient cycling inferred from late Holocene peat and lake sediment records in subarctic Sweden

(2010) Ulla Kokfelt et al.   JOURNAL OF PALEOLIMNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin

(2009) Verena B. Heuer et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Estimates of Biogenic Methane Production Rates in Deep Marine Sediments at Hydrate Ridge, Cascadia Margin

(2008) F. S. Colwell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Vulnerability of Permafrost Carbon to Climate Change: Implications for the Global Carbon Cycle

(2008) Edward A. G. Schuur et al.   BIOSCIENCE

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Sparse PLS for Variable Selection when Integrating Omics Data

(2008) Kim-Anh Lê Cao et al.   Statistical Applications in Genetics and Molecular Biology

Sparse principal component analysis via regularized low rank matrix approximation

(2007) Haipeng Shen et al.   JOURNAL OF MULTIVARIATE ANALYSIS