Variations of earthworm gut bacterial community composition and metabolic functions in coastal upland soil along a 700-year reclamation chronosequence

Contrasting pathways of carbon sequestration in paddy and upland soils

(2021) Xiangbi Chen et al.   GLOBAL CHANGE BIOLOGY

The bacterial community structures in response to the gut passage of earthworm (Eisenia fetida) feeding on cow dung and domestic sludge: Illumina high-throughput sequencing-based data analysis

(2020) Jian Hu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Shifts in reclamation management strategies shape the role of exopolysaccharide and lipopolysaccharide‐producing bacteria during soil formation

(2020) Miljenka Vuko et al.   Microbial Biotechnology

Changes of soil-rhizosphere microbiota after organic amendment application in a Hordeum vulgare L. short-term greenhouse experiment

(2020) Michael M. Obermeier et al.   PLANT AND SOIL

Fates of Antibiotic Resistance Genes in the Gut Microbiome from Different Soil Fauna under Long-Term Fertilization

(2020) Fei Zheng et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Relating the prevalence of plasmid-mediated AmpC beta-lactamase genes to aquatic environmental factors

(2020) Roelof Dirk Coertze et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Long-term application of organic fertilization causes the accumulation of antibiotic resistome in earthworm gut microbiota

(2019) Jing Ding et al.   ENVIRONMENT INTERNATIONAL

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Association between heavy metals and antibiotic-resistant human pathogens in environmental reservoirs: A review

(2019) Christine C. Nguyen et al.   Frontiers of Environmental Science & Engineering

Partial replacement of inorganic phosphorus (P) by organic manure reshapes phosphate mobilizing bacterial community and promotes P bioavailability in a paddy soil

(2019) Qing-Fang Bi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bacterial communities of soil and earthworm casts of native Palouse Prairie remnants and no-till wheat cropping systems

(2019) Daniel C. Schlatter et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of long-term fertilization on phoD -harboring bacterial community in Karst soils

(2018) Yajun Hu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling

(2018) Bangxiao Zheng et al.   Science China-Life Sciences

Effects of long-term fertilization on the associated microbiota of soil collembolan

(2018) Jing Ding et al.   SOIL BIOLOGY & BIOCHEMISTRY

Exposure to tetracycline perturbs the microbiome of soil oligochaete Enchytraeus crypticus

(2018) Jun Ma et al.   SCIENCE OF THE TOTAL ENVIRONMENT

25 years of serving the community with ribosomal RNA gene reference databases and tools

(2017) Frank Oliver Glöckner et al.   JOURNAL OF BIOTECHNOLOGY

Bacterial succession along a long-term chronosequence of paddy soil in the Yangtze River Delta, China

(2017) Long-Jun Ding et al.   SOIL BIOLOGY & BIOCHEMISTRY

A comparative study of gut microbiota profiles of earthworms fed in three different substrates

(2017) Dianfeng Liu et al.   SYMBIOSIS

Mechanisms of distinct activated carbon and biochar amendment effects on petroleum vapour biofiltration in soil

(2017) Khaled M. Bushnaf et al.   Environmental Science-Processes & Impacts

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla

(2017) Eric D. Becraft et al.   Frontiers in Microbiology

Continental-scale pollution of estuaries with antibiotic resistance genes

(2017) Yong-Guan Zhu et al.   Nature Microbiology

Excellent N-fixing and P-solubilizing traits in earthworm gut-isolated bacteria: A vermicompost based assessment with vegetable market waste and rice straw feed mixtures

(2016) Nazneen Hussain et al.   BIORESOURCE TECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Earthworm burrows: Kinetics and spatial distribution of enzymes of C-, N- and P- cycles

(2016) Duyen T.T. Hoang et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Earthworm services for cropping systems. A review

(2015) Michel Bertrand et al.   Agronomy for Sustainable Development

Soil bacterial communities are shaped by temporal and environmental filtering: evidence from a long-term chronosequence

(2015) Zachary Freedman et al.   ENVIRONMENTAL MICROBIOLOGY

Towards an integrated phylogenetic classification of the Tremellomycetes

(2015) X.-Z. Liu et al.   STUDIES IN MYCOLOGY

The effect of anthropogenic arsenic contamination on the earthworm microbiome

(2014) Daniel Antony Pass et al.   ENVIRONMENTAL MICROBIOLOGY

Black carbon accrual during 2000 years of paddy-rice and non-paddy cropping in the Yangtze River Delta, China

(2013) Eva Lehndorff et al.   GLOBAL CHANGE BIOLOGY

Bacterial succession during 500 years of soil development under agricultural use

(2012) Jun Cui et al.   ECOLOGICAL RESEARCH

Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil

(2011) Laetitia Bernard et al.   ISME Journal

Distinct microbial and faunal communities and translocated carbon in Lumbricus terrestris drilospheres

(2011) Mary E. Stromberger et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Clostridiaceae and Enterobacteriaceae as active fermenters in earthworm gut content

(2010) Pia K Wüst et al.   ISME Journal

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chronosequential changes of selected pedogenic properties in paddy soils as compared with non-paddy soils

(2009) Yue-Qin Cheng et al.   GEODERMA

Gut wall bacteria of earthworms: a natural selection process

(2009) Dwipendra Thakuria et al.   ISME Journal

Diet-related composition of the gut microbiota of Lumbricus rubellus as revealed by a molecular fingerprinting technique and cloning

(2009) B.A. Knapp et al.   SOIL BIOLOGY & BIOCHEMISTRY