Pesticide effects on nitrogen cycle related microbial functions and community composition

The response of soil and phyllosphere microbial communities to repeated application of the fungicide iprodione: accelerated biodegradation or toxicity?

(2020) A Katsoula et al.   FEMS MICROBIOLOGY ECOLOGY

Mineralization and nitrification: Archaea dominate ammonia-oxidising communities in grassland soils

(2020) Dave R. Clark et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bioaccumulation, biotransformation and toxic effect of fipronil in Escherichia coli

(2019) Saurabh Bhatti et al.   CHEMOSPHERE

Effects of nitrification inhibitor and herbicides on nitrification, nitrite and nitrate consumptions and nitrous oxide emission in an Australian sugarcane soil

(2018) Manyun Zhang et al.   BIOLOGY AND FERTILITY OF SOILS

Minor effects of herbicides on microbial activity in agricultural soils are detected by N-transformation but not enzyme activity assays

(2018) Michael T. Rose et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Effects of trifluralin on the soil microbial community and functional groups involved in nitrogen cycling

(2018) Pengqiang Du et al.   JOURNAL OF HAZARDOUS MATERIALS

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Clomazone influence soil microbial community and soil nitrogen cycling

(2018) Pengqiang Du et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Assessment of the impact of three pesticides on microbial dynamics and functions in a lab-to-field experimental approach

(2018) P.A. Karas et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

(2018) Ricardo J. Eloy Alves et al.   Nature Communications

Blame it on the metabolite: 3,5-dichloraniline rather than the parent compound is responsible for decreasing diversity and function of soil microorganisms

(2018) S. Vasileiadis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Responses of Nitrogen-Cycling Microorganisms to Dazomet Fumigation

(2018) Wensheng Fang et al.   Frontiers in Microbiology

Changes in the abundance and community composition of different nitrogen cycling groups in response to fumigation with 1,3-dichloropropene

(2018) Wensheng Fang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Symbiotic Nitrogen Fixation and the Challenges to Its Extension to Nonlegumes

(2016) Florence Mus et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

”LOVE TO HATE” pesticides: felicity or curse for the soil microbial community? An FP7 IAPP Marie Curie project aiming to establish tools for the assessment of the mechanisms controlling the interactions of pesticides with soil microorganisms

(2016) D. G. Karpouzas et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

New Panfungal Real-Time PCR Assay for Diagnosis of Invasive Fungal Infections

(2016) Clara Valero et al.   JOURNAL OF CLINICAL MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Sterol Synthesis in Diverse Bacteria

(2016) Jeremy H. Wei et al.   Frontiers in Microbiology

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Behaviour of pendimethalin and oxyfluorfen in peanut field soil: effects on soil biological and biochemical activities

(2015) Ajoy Saha et al.   CHEMISTRY AND ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Pesticide Side Effects in an Agricultural Soil Ecosystem as Measured by amoA Expression Quantification and Bacterial Diversity Changes

(2015) Louise Feld et al.   PLoS One

Effects of pesticides on soil enzymes: a review

(2014) Wassila Riah et al.   Environmental Chemistry Letters

Systemic insecticides (neonicotinoids and fipronil): trends, uses, mode of action and metabolites

(2014) N. Simon-Delso et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Short-term effects of the herbicide napropamide on the activity and structure of the soil microbial community assessed by the multi-approach analysis

(2013) Mariusz Cycoń et al.   APPLIED SOIL ECOLOGY

Effects of chlorimuron-ethyl application with or without urea fertilization on soil ammonia-oxidizing bacteria and archaea

(2013) Huanbo Tan et al.   JOURNAL OF HAZARDOUS MATERIALS

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Dynamics of ammonia-oxidizing archaea and bacteria populations and contributions to soil nitrification potentials

(2012) Anne E Taylor et al.   ISME Journal

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Distinct Responses in Ammonia-Oxidizing Archaea and Bacteria after Addition of Biosolids to an Agricultural Soil

(2011) John J. Kelly et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Simazine application inhibits nitrification and changes the ammonia-oxidizing bacterial communities in a fertilized agricultural soil

(2011) Marcela Hernández et al.   FEMS MICROBIOLOGY ECOLOGY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Autotrophic ammonia oxidation by soil thaumarchaea

(2010) L.-M. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing

(2009) Daniel N Frank   BMC BIOINFORMATICS

Effect of organic carbon and pH on soil sorption of sulfamethazine

(2009) Warisara Lertpaitoonpan et al.   CHEMOSPHERE

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY