Genomic analysis of distinct bleaching tolerances among cryptic coral species

Cryptic lineages respond differently to coral bleaching

(2020) Matías Gómez‐Corrales et al.   MOLECULAR ECOLOGY

Adaptive introgression enables evolutionary rescue from extreme environmental pollution

(2019) Elias M. Oziolor et al.   SCIENCE

What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species

(2018) C Ryan Campbell et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Accurate population genetic measurements require cryptic species identification in corals

(2018) Elizabeth A. Sheets et al.   CORAL REEFS

Long-term growth rates and effects of bleaching in Acropora hyacinthus

(2018) Zachary Gold et al.   CORAL REEFS

Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion

(2018) Paul Jay et al.   CURRENT BIOLOGY

PDGFRβ translocates to the nucleus and regulates chromatin remodeling via TATA element–modifying factor 1

(2018) Natalia Papadopoulos et al.   JOURNAL OF CELL BIOLOGY

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

(2018) Matthew R. Jones et al.   SCIENCE

Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae

(2018) Diego Ayala et al.   MOLECULAR ECOLOGY

The Roles of Introgression and Climate Change in the Rise to Dominance of Acropora Corals

(2018) Yafei Mao et al.   CURRENT BIOLOGY

Selection and gene flow shape genomic islands that control floral guides

(2018) Hugo Tavares et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polygenic evolution drives species divergence and climate adaptation in corals

(2017) Noah H. Rose et al.   EVOLUTION

Global warming and recurrent mass bleaching of corals

(2017) Terry P. Hughes et al.   NATURE

Practical low-coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species

(2016) Nina Overgaard Therkildsen et al.   Molecular Ecology Resources

Making sense of genomic islands of differentiation in light of speciation

(2016) Jochen B. W. Wolf et al.   NATURE REVIEWS GENETICS

Genetic markers for antioxidant capacity in a reef-building coral

(2016) Y. K. Jin et al.   Science Advances

Gene Networks in the Wild: Identifying Transcriptional Modules that Mediate Coral Resistance to Experimental Heat Stress

(2015) Noah H. Rose et al.   Genome Biology and Evolution

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Multilocus Adaptation Associated with Heat Resistance in Reef-Building Corals

(2014) Rachael A. Bay et al.   CURRENT BIOLOGY

Supergenes and Complex Phenotypes

(2014) Tanja Schwander et al.   CURRENT BIOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Do Heliconius butterfly species exchange mimicry alleles?

(2013) J. Smith et al.   Biology Letters

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

Long prereproductive selection and divergence by depth in a Caribbean candelabrum coral

(2013) C. Prada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D

(2012) Jason T Ladner et al.   BMC EVOLUTIONARY BIOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Extensive sympatry, cryptic diversity and introgression throughout the geographic distribution of two coral species complexes

(2012) JASON T. LADNER et al.   MOLECULAR ECOLOGY

Population genomics based on low coverage sequencing: how low should we go?

(2012) C. Alex Buerkle et al.   MOLECULAR ECOLOGY

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

(2012) Carolina Pardo-Diaz et al.   PLoS Genetics

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Many corals host thermally resistant symbionts in high-temperature habitat

(2010) T. A. Oliver et al.   CORAL REEFS

Adaptive introgression of abiotic tolerance traits in the sunflower Helianthus annuus

(2010) Kenneth D. Whitney et al.   NEW PHYTOLOGIST

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Relaxed selection in the wild

(2009) David C. Lahti et al.   TRENDS IN ECOLOGY & EVOLUTION

Climate change and coral reef bleaching: An ecological assessment of long-term impacts, recovery trends and future outlook

(2008) Andrew C. Baker et al.   ESTUARINE COASTAL AND SHELF SCIENCE