Characterization of soils conducive and non-conducive to Prunus replant disease

Soil fertilization has different effects on bacterial community composition in the Penicillium canescens hyphosphere and in bulk soil

(2020) Yuan Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of bioaerosols

(2020) Hamza Mbareche et al.   PeerJ

Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems

(2020) Wenjun Tan et al.   Scientific Reports

First Report of Pythium sylvaticum Causing Corn Root Rot in Northeastern China

(2020) Xiujun Tang et al.   PLANT DISEASE

Exploring microbial determinants of apple replant disease (ARD): A microhabitat approach under split-root design

(2020) Alicia Balbín-Suárez et al.   FEMS MICROBIOLOGY ECOLOGY

Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites

(2020) B. Yim et al.   Horticulture Research

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Efficacy of Anaerobic Soil Disinfestation for Control of Prunus Replant Disease

(2018) G. Browne et al.   PLANT DISEASE

First Report of Root Rot Caused by Pythium sylvaticum on Lettuce in Italy

(2018) G. Gilardi et al.   PLANT DISEASE

Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease

(2018) Xorla Kanfra et al.   Frontiers in Plant Science

Oomycete Species Associated with Soybean Seedlings in North America—Part II: Diversity and Ecology in Relation to Environmental and Edaphic Factors

(2017) J. Alejandro Rojas et al.   PHYTOPATHOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Oomycete-specific ITS primers for identification and metabarcoding

(2016) Taavi Riit et al.   MycoKeys

Characterization ofPseudomonas chlororaphisfromTheobroma cacaoL. rhizosphere with antagonistic activity againstPhytophthora palmivora(Butler)

(2015) Y. Acebo-Guerrero et al.   JOURNAL OF APPLIED MICROBIOLOGY

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

First Report of Mortierella alpina (Mortierellaceae, Zygomycota) Isolated from Crop Field Soil in Korea

(2015) Dil Raj Yadav et al.   MYCOBIOLOGY

Azoarcus sp. CIB, an Anaerobic Biodegrader of Aromatic Compounds Shows an Endophytic Lifestyle

(2014) Helga Fernández et al.   PLoS One

Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables

(2013) Colin R Jackson et al.   BMC MICROBIOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing

(2012) Cécile Monard et al.   FEMS MICROBIOLOGY ECOLOGY

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

(2012) David A W Soergel et al.   ISME Journal

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Correlations between Root-Associated Microorganisms and Peach Replant Disease Symptoms in a California Soil

(2012) Jiue-in Yang et al.   PLoS One

Gaiella occulta gen. nov., sp. nov., a novel representative of a deep branching phylogenetic lineage within the class Actinobacteria and proposal of Gaiellaceae fam. nov. and Gaiellales ord. nov.

(2011) Luciana Albuquerque et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Soil fungal communities as indicators for replanting new peach orchards in intensively cultivated areas

(2010) Luisa M. Manici et al.   EUROPEAN JOURNAL OF AGRONOMY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigations into peach seedling stunting caused by a replant soil

(2009) Elizabeth Bent et al.   FEMS MICROBIOLOGY ECOLOGY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS