Unveiling biogeographical patterns of the ichthyofauna in the Tuichi basin, a biodiversity hotspot in the Bolivian Amazon, using environmental DNA

Global determinants of freshwater and marine fish genetic diversity

(2020) Stéphanie Manel et al.   Nature Communications

A database of freshwater fish species of the Amazon Basin

(2020) Céline Jézéquel et al.   Scientific Data

Threatened fish spawning area revealed by specific metabarcoding identification of eggs and larvae in the Beni River, upper Amazon

(2020) Guido Miranda-Chumacero et al.   Global Ecology and Conservation

Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding

(2020) Naiara Guimarães Sales et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers

(2019) Isabel Cantera et al.   Scientific Reports

Measuring global fish species richness with eDNA metabarcoding

(2019) Christopher L. Jerde et al.   Molecular Ecology Resources

Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals

(2019) Allan D. McDevitt et al.   JOURNAL OF FISH BIOLOGY

Global biogeographical regions of freshwater fish species

(2019) Boris Leroy et al.   JOURNAL OF BIOGEOGRAPHY

Predicting the fate of eDNA in the environment and implications for studying biodiversity

(2019) Jori B. Harrison et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Environmental DNA facilitates accurate, inexpensive, and multiyear population estimates of millions of anadromous fish

(2019) Meredith Pochardt et al.   Molecular Ecology Resources

Global hydro-environmental sub-basin and river reach characteristics at high spatial resolution

(2019) Simon Linke et al.   Scientific Data

Metabarcoding for the parallel identification of several hundred predators and their prey: Application to bat species diet analysis

(2018) Maxime Galan et al.   Molecular Ecology Resources

Review of Fisheries Resource Use and Status in the Madeira River Basin (Brazil, Bolivia, and Peru) Before Hydroelectric Dam Completion

(2018) Carolina R. C. Doria et al.   Reviews in Fisheries Science & Aquaculture

Surveys of environmental DNA (eDNA): a new approach to estimate occurrence in Vulnerable manatee populations

(2018) ME Hunter et al.   Endangered Species Research

Little Divergence Among Mitochondrial Lineages of Prochilodus (Teleostei, Characiformes)

(2018) Bruno F. Melo et al.   Frontiers in Genetics

Environmental DNA illuminates the dark diversity of sharks

(2018) Germain Boussarie et al.   Science Advances

Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation

(2018) Didier Pont et al.   Scientific Reports

DNA barcoding of fish fauna from low order streams of Tapajós River basin

(2018) Karen Larissa Auzier Guimarães et al.   PLoS One

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

eDNA metabarcoding: a promising method for anuran surveys in highly diverse tropical forests

(2017) Carla M. Lopes et al.   Molecular Ecology Resources

Damming the rivers of the Amazon basin

(2017) Edgardo M. Latrubesse et al.   NATURE

The potential impact of new Andean dams on Amazon fluvial ecosystems

(2017) Bruce R. Forsberg et al.   PLoS One

Hydropower and the future of Amazonian biodiversity

(2016) Alexander C. Lees et al.   BIODIVERSITY AND CONSERVATION

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

(2016) Jennifer L.A. Shaw et al.   BIOLOGICAL CONSERVATION

Amazon floodplain fish communities: Habitat connectivity and conservation in a rapidly deteriorating environment

(2016) Lawrence E. Hurd et al.   BIOLOGICAL CONSERVATION

Improving herpetological surveys in eastern North America using the environmental DNA method

(2016) Anaïs Lacoursière-Roussel et al.   GENOME

Environmental DNA (eDNA) detects the invasive rusty crayfish Orconectes rusticus at low abundances

(2016) Matthew M. Dougherty et al.   JOURNAL OF APPLIED ECOLOGY

Fish biodiversity and conservation in South America

(2016) R. E. Reis et al.   JOURNAL OF FISH BIOLOGY

Balancing hydropower and biodiversity in the Amazon, Congo, and Mekong

(2016) K. O. Winemiller et al.   SCIENCE

PrimerMiner : an r package for development and in silico validation of DNA metabarcoding primers

(2016) Vasco Elbrecht et al.   Methods in Ecology and Evolution

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System

(2016) Raphaël Civade et al.   PLoS One

Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms

(2015) Katherine M. Strickler et al.   BIOLOGICAL CONSERVATION

Large-scale degradation of Amazonian freshwater ecosystems

(2015) Leandro Castello et al.   GLOBAL CHANGE BIOLOGY

Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys

(2015) Hideyuki Doi et al.   PLoS One

Heatmap3: an improved heatmap package with more powerful and convenient features

(2014) Shilin Zhao et al.   BMC BIOINFORMATICS

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Selecting thresholds for the prediction of species occurrence with presence-only data

(2013) Canran Liu et al.   JOURNAL OF BIOGEOGRAPHY

Detecting an elusive invasive species: a diagnostic PCR to detect Burmese python in Florida waters and an assessment of persistence of environmental DNA

(2013) Antoinette J. Piaggio et al.   Molecular Ecology Resources

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The vulnerability of Amazon freshwater ecosystems

(2013) Leandro Castello et al.   Conservation Letters

Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrogLithobates catesbeianus

(2012) Tony Dejean et al.   JOURNAL OF APPLIED ECOLOGY

The future of environmental DNA in ecology

(2012) NIGEL G. YOCCOZ   MOLECULAR ECOLOGY

Proliferation of Hydroelectric Dams in the Andean Amazon and Implications for Andes-Amazon Connectivity

(2012) Matt Finer et al.   PLoS One

Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals

(2012) Andrew D. Foote et al.   PLoS One

Distribution of arapaima (Arapaima gigas) (Pisces: Arapaimatidae) in Bolivia: implications in the control and management of a non-native population

(2012) Guido Miranda-Chumacero et al.   BioInvasions Records

Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders

(2011) Caren S. Goldberg et al.   PLoS One

Persistence of Environmental DNA in Freshwater Ecosystems

(2011) Tony Dejean et al.   PLoS One

A Regional Perspective on the Diversity and Conservation of Tropical Andean Fishes

(2010) ELIZABETH P. ANDERSON et al.   CONSERVATION BIOLOGY

Altitudinal variation in fish assemblage diversity in streams of the central Andes of Colombia

(2010) U. Jaramillo-Villa et al.   JOURNAL OF FISH BIOLOGY

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters