Locus-specific analysis of Transposable Elements during the progression of ALS in the SOD1G93A mouse model

Genomic Mosaicism Formed by Somatic Variation in the Aging and Diseased Brain

(2021) Isabel Costantino et al.   Genes

The Role of the SLC Transporters Protein in the Neurodegenerative Disorders

(2020) Asli Ayka et al.   Clinical Psychopharmacology and Neuroscience

Measuring and interpreting transposable element expression

(2020) Sophie Lanciano et al.   NATURE REVIEWS GENETICS

Transposon expression in the Drosophila brain is driven by neighboring genes and diversifies the neural transcriptome

(2020) Christoph D. Treiber et al.   GENOME RESEARCH

LINE-2 transposable elements are a source of functional human microRNAs and target sites

(2019) Rebecca Petri et al.   PLoS Genetics

Author Correction: Regulation of transposable elements by DNA modifications

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Risk Factors and Emerging Therapies in Amyotrophic Lateral Sclerosis

(2019) Natalia Nowicka et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons

(2019) Elaine Y. Liu et al.   Cell Reports

Subtype classification and functional annotation of L1Md retrotransposon promoters

(2019) Meng Zhou et al.   Mobile DNA

Postmortem Cortex Samples Identify Distinct Molecular Subtypes of ALS: Retrotransposon Activation, Oxidative Stress, and Activated Glia

(2019) Oliver H. Tam et al.   Cell Reports

TEcandidates: prediction of genomic origin of expressed transposable elements using RNA-seq data

(2018) Braulio Valdebenito-Maturana et al.   BIOINFORMATICS

Mouse models of ALS: Past, present and future

(2018) Cathleen Lutz   BRAIN RESEARCH

DNA plasticity and damage in amyotrophic lateral sclerosis

(2018) Alexandra Kretz et al.   Neural Regeneration Research

Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation

(2018) Daniel R Fuentes et al.   eLife

Retrotransposons in the development and progression of amyotrophic lateral sclerosis

(2018) Abigail L Savage et al.   JOURNAL OF NEUROLOGY NEUROSURGERY AND PSYCHIATRY

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Silencing of the Drosophila ortholog of SOX5 leads to abnormal neuronal development and behavioral impairment

(2017) Airong Li et al.   HUMAN MOLECULAR GENETICS

DNA strand breaks and TDP-43 mislocation are absent in the murine hSOD1G93A model of amyotrophic lateral sclerosis in vivo and in vitro

(2017) Diane Penndorf et al.   PLoS One

ATXN7L3 and ENY2 Coordinate Activity of Multiple H2B Deubiquitinases Important for Cellular Proliferation and Tumor Growth

(2016) Boyko S. Atanassov et al.   MOLECULAR CELL

Retrotransposons as regulators of gene expression

(2016) R. A. Elbarbary et al.   SCIENCE

Polyester: simulating RNA-seq datasets with differential transcript expression

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Characterization of Cep85 - a new antagonist of Nek2A that is involved in the regulation of centrosome disjunction

(2015) C. Chen et al.   JOURNAL OF CELL SCIENCE

Stratified gene expression analysis identifies major amyotrophic lateral sclerosis genes

(2015) Ashley R. Jones et al.   NEUROBIOLOGY OF AGING

Human endogenous retrovirus-K contributes to motor neuron disease

(2015) Wenxue Li et al.   Science Translational Medicine

L1 Retrotransposons and Somatic Mosaicism in the Brain

(2014) Sandra R. Richardson et al.   Annual Review of Genetics

Mobile DNA elements in the generation of diversity and complexity in the brain

(2014) Jennifer A. Erwin et al.   NATURE REVIEWS NEUROSCIENCE

Homozygosity analysis in amyotrophic lateral sclerosis

(2013) Kin Mok et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Intricate interplay between astrocytes and motor neurons in ALS

(2013) H. P. Phatnani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Mammalian Conserved Element Derived from SINE Displays Enhancer Properties Recapitulating Satb2 Expression in Early-Born Callosal Projection Neurons

(2011) Kensuke Tashiro et al.   PLoS One

Identification of active loci of a human endogenous retrovirus in neurons of patients with amyotrophic lateral sclerosis

(2010) Renée Douville et al.   ANNALS OF NEUROLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS