Phylogenetics of Japanese Geranium (Geraniaceae) using chloroplast genome sequences and genome-wide single nucleotide polymorphisms

Genetic diversity and population demography of Geranium soboliferum var. kiusianum: a glacial relict plant in the wetlands of Japan

(2019) Seikan Kurata et al.   CONSERVATION GENETICS

Habitat partitioning in native Geranium species through reproductive interference

(2019) Sachiko Nishida et al.   ANNALS OF BOTANY

Species-level phylogeny, fruit evolution and diversification history of Geranium (Geraniaceae)

(2017) Thomas Marcussen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

NOVOPlasty:de novoassembly of organelle genomes from whole genome data

(2016) Nicolas Dierckxsens et al.   NUCLEIC ACIDS RESEARCH

MIG-seq: an effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform

(2015) Yoshihisa Suyama et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

ITS Polymorphisms Shed Light on Hybrid Evolution in Apomictic Plants: A Case Study on the Ranunculus auricomus Complex

(2014) Ladislav Hodač et al.   PLoS One

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Phylogenetic relationships and natural hybridization among the North American woody bamboos (Poaceae: Bambusoideae: Arundinaria )

(2010) Jimmy K. Triplett et al.   AMERICAN JOURNAL OF BOTANY

TagDust--a program to eliminate artifacts from next generation sequencing data

(2009) T. Lassmann et al.   BIOINFORMATICS

Phylogenetic relationships in Leymus (Poaceae: Triticeae) revealed by the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences

(2007) Zhipeng Liu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION