Tissue-specific transcriptomics reveal functional differences in floral development

Gene duplication at the Fascicled ear1 locus controls the fate of inflorescence meristem cells in maize

(2021) Yanfang Du et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Twenty Years of Progress in Physiological and Biochemical Investigation of RALF peptides

(2020) Matthew R Blackburn et al.   PLANT PHYSIOLOGY

SnRK1 and trehalose 6-phosphate – two ancient pathways converge to regulate plant metabolism and growth

(2020) Elena Baena-González et al.   CURRENT OPINION IN PLANT BIOLOGY

The Transcription Factor bZIP60 Links the Unfolded Protein Response (UPR) to the Heat Stress Response (HSR) in Maize

(2020) Zhaoxia Li et al.   PLANT CELL

COMPOSITUM 1 contributes to the architectural simplification of barley inflorescence via meristem identity signals

(2020) Naser Poursarebani et al.   Nature Communications

Plant stem-cell organization and differentiation at single-cell resolution

(2020) James W. Satterlee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis

(2019) Rainer Schwacke et al.   Molecular Plant

Polyamine Function in Plants: Metabolism, Regulation on Development, and Roles in Abiotic Stress Responses

(2019) Dandan Chen et al.   Frontiers in Plant Science

Evolution of TOR-SnRK dynamics in green plants and its integration with phytohormone signaling networks

(2019) Muhammed Jamsheer K et al.   JOURNAL OF EXPERIMENTAL BOTANY

Primary wall cellulose synthase regulates shoot apical meristem mechanics and growth

(2019) Arun Sampathkumar et al.   DEVELOPMENT

Tasselseed5 encoding a cytochrome C oxidase affects jasmonate catabolism in sex determination of maize

(2019) Fei Wang et al.   Journal of Integrative Plant Biology

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize

(2019) Rajandeep S Sekhon et al.   PLANT CELL

Of floral fortune: tinkering with the grain yield potential of cereal crops

(2019) Shun Sakuma et al.   NEW PHYTOLOGIST

Maize sugary enhancer1 (se1) is a gene affecting endosperm starch metabolism

(2019) Xia Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions

(2018) Muhammed Jamsheer K et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Expanding roles for pectins in plant development

(2018) Adam M. Saffer   Journal of Integrative Plant Biology

GRF-interacting factor1Regulates Shoot Architecture and Meristem Determinacy in Maize

(2018) Dan Zhang et al.   PLANT CELL

FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis

(2018) Muhammed Jamsheer K et al.   PLANT JOURNAL

Trehalose 6-Phosphate Regulates Photosynthesis and Assimilate Partitioning in Reproductive Tissue

(2018) Maria Oszvald et al.   PLANT PHYSIOLOGY

Interactive Roles for AMPK and Glycogen from Cellular Energy Sensing to Exercise Metabolism

(2018) Natalie Janzen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Secondary cell wall biosynthesis

(2018) Ruiqin Zhong et al.   NEW PHYTOLOGIST

Grass inflorescence architecture and evolution: the origin of novel signaling centers

(2017) Clinton J. Whipple   NEW PHYTOLOGIST

Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants

(2017) Pascal Schläpfer et al.   PLANT PHYSIOLOGY

Branched Pectic Galactan in Phloem-Sieve-Element Cell Walls: Implications for Cell Mechanics

(2017) Thomas A. Torode et al.   PLANT PHYSIOLOGY

Transcriptome analysis of genes involved in secondary cell wall biosynthesis in developing internodes of Miscanthus lutarioriparius

(2017) Ruibo Hu et al.   Scientific Reports

A Tale of Two Sugars: Trehalose 6-Phosphate and Sucrose

(2016) Carlos M. Figueroa et al.   PLANT PHYSIOLOGY

Divide et impera : boundaries shape the plant body and initiate new meristems

(2015) Quan Wang et al.   NEW PHYTOLOGIST

From Leaf to Kernel: Trehalose-6-Phosphate Signaling Moves Carbon in the Field: Figure 1.

(2015) Sjef Smeekens   PLANT PHYSIOLOGY

Expression of Arabidopsis FCS-Like Zinc finger genes is differentially regulated by sugars, cellular energy level, and abiotic stress

(2015) Muhammed Jamsheer K et al.   Frontiers in Plant Science

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Gene regulatory interactions at lateral organ boundaries in maize

(2014) M. W. Lewis et al.   DEVELOPMENT

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Transcriptomic Analyses Indicate That Maize Ligule Development Recapitulates Gene Expression Patterns That Occur during Lateral Organ Initiation

(2014) Robyn Johnston et al.   PLANT CELL

DUF581 Is Plant Specific FCS-Like Zinc Finger Involved in Protein-Protein Interaction

(2014) Muhammed Jamsheer K et al.   PLoS One

Trehalose-6-phosphate and SnRK1 kinases in plant development and signaling: the emerging picture

(2014) Allen Y.-L. Tsai et al.   Frontiers in Plant Science

The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants

(2014) Madlen Nietzsche et al.   Frontiers in Plant Science

Meristem identity and phyllotaxis in inflorescence development

(2014) Madelaine E. Bartlett et al.   Frontiers in Plant Science

Regulatory modules controlling maize inflorescence architecture

(2013) A. L. Eveland et al.   GENOME RESEARCH

Non-Cell-Autonomous Postmortem Lignification of Tracheary Elements in Zinnia elegans

(2013) E. Pesquet et al.   PLANT CELL

Heterogeneity and Glycan Masking of Cell Wall Microstructures in the Stems of Miscanthus x giganteus, and Its Parents M. sinensis and M. sacchariflorus

(2013) Jie Xue et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Ontogeny of the Maize Shoot Apical Meristem

(2012) E. M. Takacs et al.   PLANT CELL

Transcriptional and Metabolic Analysis of Senescence Induced by Preventing Pollination in Maize

(2012) R. S. Sekhon et al.   PLANT PHYSIOLOGY

TCP transcription factor, BRANCH ANGLE DEFECTIVE 1 (BAD1), is required for normal tassel branch angle formation in maize

(2012) Fang Bai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pectin-Induced Changes in Cell Wall Mechanics Underlie Organ Initiation in Arabidopsis

(2011) Alexis Peaucelle et al.   CURRENT BIOLOGY

Starch-Branching Enzyme IIa Is Required for Proper Diurnal Cycling of Starch in Leaves of Maize

(2011) M. D. Yandeau-Nelson et al.   PLANT PHYSIOLOGY

Biosynthesis of Pectin

(2010) J. Harholt et al.   PLANT PHYSIOLOGY

Plant Cell Walls

(2010) K. Keegstra   PLANT PHYSIOLOGY

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

Coming into bloom: the specification of floral meristems

(2009) C. Liu et al.   DEVELOPMENT

bearded-ear Encodes a MADS Box Transcription Factor Critical for Maize Floral Development

(2009) B. E. Thompson et al.   PLANT CELL

Translational Biology: From Arabidopsis Flowers to Grass Inflorescence Architecture

(2009) B. E. Thompson et al.   PLANT PHYSIOLOGY

Expression Level of ABERRANT PANICLE ORGANIZATION1 Determines Rice Inflorescence Form through Control of Cell Proliferation in the Meristem

(2009) K. Ikeda-Kawakatsu et al.   PLANT PHYSIOLOGY

tasselseed1 Is a Lipoxygenase Affecting Jasmonic Acid Signaling in Sex Determination of Maize

(2009) I. F. Acosta et al.   SCIENCE

An extended set of monoclonal antibodies to pectic homogalacturonan

(2008) Yves Verhertbruggen et al.   CARBOHYDRATE RESEARCH

Arabidopsis Phyllotaxis Is Controlled by the Methyl-Esterification Status of Cell-Wall Pectins

(2008) Alexis Peaucelle et al.   CURRENT BIOLOGY

Unique aspects of the grass cell wall

(2008) J VOGEL   CURRENT OPINION IN PLANT BIOLOGY

Floret-specific differences in gene expression and support for the hypothesis that tapetal degeneration of Zea mays L. occurs via programmed cell death

(2008) David S. Skibbe et al.   Journal of Genetics and Genomics

Disrupting Two Arabidopsis thaliana Xylosyltransferase Genes Results in Plants Deficient in Xyloglucan, a Major Primary Cell Wall Component

(2008) D. M. Cavalier et al.   PLANT CELL

Autophagy regulated by day length determines the number of fertile florets in wheat

(2008) Hernán O. Ghiglione et al.   PLANT JOURNAL

The Relationship between Auxin Transport and Maize Branching

(2008) A. Gallavotti et al.   PLANT PHYSIOLOGY