The small RNA‐mediated gene silencing machinery is required in Arabidopsis for stimulation of growth, systemic disease resistance, and suppression of the nitrile‐specifier gene NSP4 by Trichoderma atroviride

The Arabidopsis active demethylase ROS1 cis-regulates defense genes by erasing DNA methylation at promoter-regulatory regions

(2021) Thierry Halter et al.   eLife

Trichoderma and the Plant Heritable Priming Responses

(2021) María E. Morán-Diez et al.   Journal of Fungi

Molecular Modeling of Epithiospecifier and Nitrile-Specifier Proteins of Broccoli and Their Interaction with Aglycones

(2020) Juan Román et al.   MOLECULES

Mass-spectrometry-based draft of the Arabidopsis proteome

(2020) Julia Mergner et al.   NATURE

Biotic stress triggered small RNA and RNAi defense response in plants

(2020) Mohsin Ali et al.   MOLECULAR BIOLOGY REPORTS

Trichoderma histone deacetylase HDA-2 modulates multiple responses in Arabidopsis

(2019) Magnolia Estrada-Rivera et al.   PLANT PHYSIOLOGY

Trichoderma as a Model to Study Effector-Like Molecules

(2019) Claudia A. Ramírez-Valdespino et al.   Frontiers in Microbiology

Volatile organic compounds of some Trichoderma spp. increase growth and induce salt tolerance in Arabidopsis thaliana

(2017) Farnaz Jalali et al.   Fungal Ecology

Glucosinolate-Derived Isothiocyanates Inhibit Arabidopsis Growth and the Potency Depends on Their Side Chain Structure

(2017) János Urbancsok et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The ‘how’ and ‘where’ of plant microRNAs

(2017) Yu Yu et al.   NEW PHYTOLOGIST

Functional Dissection of the Pol V Largest Subunit CTD in RNA-Directed DNA Methylation

(2017) Jered M. Wendte et al.   Cell Reports

Comparison of molecular genetic utilities of TD, AFLP, and MSAP among the accessions of japonica, indica, and Tongil of Oryza sativa L.

(2016) Ji-Yeong Choi et al.   Genes & Genomics

A Multigenic Network of ARGONAUTE4 Clade Members Controls Early Megaspore Formation in Arabidopsis

(2016) E. Hernandez-Lagana et al.   GENETICS

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

(2016) Ana López Sánchez et al.   PLANT JOURNAL

NSP-Dependent Simple Nitrile Formation Dominates upon Breakdown of Major Aliphatic Glucosinolates in Roots, Seeds, and Seedlings of Arabidopsis thaliana Columbia-0

(2016) Ute Wittstock et al.   Frontiers in Plant Science

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

High-temperature effect on genes engaged in DNA methylation and affected by DNA methylation in Arabidopsis

(2015) Mladen Naydenov et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The Epl1 and Sm1 proteins from Trichoderma atroviride and Trichoderma virens differentially modulate systemic disease resistance against different life style pathogens in Solanum lycopersicum

(2015) Miguel A. Salas-Marina et al.   Frontiers in Plant Science

How salicylic acid takes transcriptional control over jasmonic acid signaling

(2015) Lotte Caarls et al.   Frontiers in Plant Science

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

(2014) Xuehua Zhong et al.   CELL

ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation

(2014) A. D. McCue et al.   EMBO JOURNAL

Specific but interdependent functions for Arabidopsis AGO4 and AGO6 in RNA-directed DNA methylation

(2014) C.-G. Duan et al.   EMBO JOURNAL

Salicylic acid preventsTrichoderma harzianumfrom entering the vascular system of roots

(2014) Ana Alonso-Ramírez et al.   MOLECULAR PLANT PATHOLOGY

Protocol: a beginner’s guide to the analysis of RNA-directed DNA methylation in plants

(2014) Huiming Zhang et al.   Plant Methods

The Physiological Importance of Glucosinolates on Plant Response to Abiotic Stress in Brassica

(2013) María del Carmen Martínez-Ballesta et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Reconstructing de novo silencing of an active plant retrotransposon

(2013) Arturo Marí-Ordóñez et al.   NATURE GENETICS

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The REL3-mediatedTAS3ta-siRNA pathway integrates auxin and ethylene signaling to regulate nodulation inLotus japonicus

(2013) Xiaolin Li et al.   NEW PHYTOLOGIST

The Initiation of Epigenetic Silencing of Active Transposable Elements Is Triggered by RDR6 and 21-22 Nucleotide Small Interfering RNAs

(2013) S. Nuthikattu et al.   PLANT PHYSIOLOGY

Verticillium Suppression Is Associated with the Glucosinolate Composition of Arabidopsis thaliana Leaves

(2013) Katja Witzel et al.   PLoS One

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

(2013) A. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

RNA Interference Pathways in Fungi: Mechanisms and Functions

(2012) Shwu-Shin Chang et al.   Annual Review of Microbiology

NERD, a Plant-Specific GW Protein, Defines an Additional RNAi-Dependent Chromatin-Based Pathway in Arabidopsis

(2012) Dominique Pontier et al.   MOLECULAR CELL

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Colonization of Arabidopsis roots by Trichoderma atroviride promotes growth and enhances systemic disease resistance through jasmonic acid/ethylene and salicylic acid pathways

(2011) Miguel Angel Salas-Marina et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning

(2011) Maria Greco et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12

(2011) Xiaoming Zhang et al.   MOLECULAR CELL

Trichoderma harzianum strain T-22 induces changes in phytohormone levels in cherry rootstocks (Prunus cerasus × P. canescens)

(2011) Adriano Sofo et al.   PLANT GROWTH REGULATION

Role of camalexin, indole glucosinolates, and side chain modification of glucosinolate-derived isothiocyanates in defense of Arabidopsis against Sclerotinia sclerotiorum

(2011) Henrik U. Stotz et al.   PLANT JOURNAL

Broad-Spectrum Suppression of Innate Immunity Is Required for Colonization of Arabidopsis Roots by the Fungus Piriformospora indica

(2011) S. Jacobs et al.   PLANT PHYSIOLOGY

Independent Chromatin Binding of ARGONAUTE4 and SPT5L/KTF1 Mediates Transcriptional Gene Silencing

(2011) M. Jordan Rowley et al.   PLoS Genetics

The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity

(2011) Ana López et al.   PLoS Genetics

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

Role of Small RNAs in Host-Microbe Interactions

(2010) Surekha Katiyar-Agarwal et al.   Annual Review of Phytopathology

Induced Systemic Resistance and Plant Responses to Fungal Biocontrol Agents

(2010) Michal Shoresh et al.   Annual Review of Phytopathology

Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response

(2010) Michal Jaskiewicz et al.   EMBO REPORTS

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci

(2010) E. R. Havecker et al.   PLANT CELL

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

AvrPtoB Targets the LysM Receptor Kinase CERK1 to Promote Bacterial Virulence on Plants

(2009) Selena Gimenez-Ibanez et al.   CURRENT BIOLOGY

cis-Regulatory elements in plant cell signaling

(2009) Henry D Priest et al.   CURRENT OPINION IN PLANT BIOLOGY

Host–pathogen warfare at the plant cell wall

(2009) Kian Hématy et al.   CURRENT OPINION IN PLANT BIOLOGY

The REDUCED LEAFLET Genes Encode Key Components of the trans-Acting Small Interfering RNA Pathway and Regulate Compound Leaf and Flower Development in Lotus japonicus

(2009) J. Yan et al.   PLANT PHYSIOLOGY

The Role of WRKY Transcription Factors in Plant Immunity

(2009) S. P. Pandey et al.   PLANT PHYSIOLOGY

Does chromatin remodeling mark systemic acquired resistance?

(2009) Harrold A. van den Burg et al.   TRENDS IN PLANT SCIENCE

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Negative Regulation of PAMP-Triggered Immunity by an E3 Ubiquitin Ligase Triplet in Arabidopsis

(2008) Marco Trujillo et al.   CURRENT BIOLOGY

Endogenous small RNAs and antibacterial immunity in plants

(2008) Hailing Jin   FEBS LETTERS

RNA silencing is required for Arabidopsis defence against Verticillium wilt disease

(2008) Ursula Ellendorff et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fungal genus Hypocrea/Trichoderma: from barcodes to biodiversity

(2008) Christian P. Kubicek et al.   Journal of Zhejiang University-SCIENCE B

The Mechanism Selecting the Guide Strand from Small RNA Duplexes is Different Among Argonaute Proteins

(2008) Atsushi Takeda et al.   PLANT AND CELL PHYSIOLOGY

MYB72, a node of convergence in induced systemic resistance triggered by a fungal and a bacterial beneficial microbe

(2008) G. Segarra et al.   PLANT BIOLOGY

Role of Swollenin, an Expansin-Like Protein from Trichoderma, in Plant Root Colonization

(2008) Y. Brotman et al.   PLANT PHYSIOLOGY