Modeling temporal and hormonal regulation of plant transcriptional response to wounding

A hydrophobic residue stabilizes dimers of regulatory ACT-like domains in plant basic helix-loop-helix transcription factors

(2021) Yun Sun Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-wide analysis of MpBHLH12, a IIIf basic helix-loop-helix transcription factor of Marchantia polymorpha

(2019) Haruka Arai et al.   JOURNAL OF PLANT RESEARCH

Large-scale phylogenomic analysis suggests three ancient superclades of the WUSCHEL-RELATED HOMEOBOX transcription factor family in plants

(2019) Cheng-Chiang Wu et al.   PLoS One

Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants

(2018) Kranthi Varala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predictive Models of Spatial Transcriptional Response to High Salinity

(2017) Sahra Uygun et al.   PLANT PHYSIOLOGY

Wounding Triggers Callus Formation via Dynamic Hormonal and Transcriptional Changes

(2017) Momoko Ikeuchi et al.   PLANT PHYSIOLOGY

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

Positional distribution of transcription factor binding sites in Arabidopsis thaliana

(2016) Chun-Ping Yu et al.   Scientific Reports

Optimization of CRISPR/Cas9 genome editing to modify abiotic stress responses in plants

(2016) Yuriko Osakabe et al.   Scientific Reports

Hormone crosstalk in wound stress response: wound-inducible amidohydrolases can simultaneously regulate jasmonate and auxin homeostasis inArabidopsis thaliana

(2015) Tong Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology

(2015) Mohammad Amin Omidbakhshfard et al.   Molecular Plant

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Cross-talk between signaling pathways: The link between plant secondary metabolite production and wounding stress response

(2015) Daniel A. Jacobo-Velázquez et al.   Scientific Reports

Egg cell-specific promoter-controlled CRISPR/Cas9 efficiently generates homozygous mutants for multiple target genes in Arabidopsis in a single generation

(2015) Zhi-Ping Wang et al.   GENOME BIOLOGY

Predisposition in Plant Disease: Exploiting the Nexus in Abiotic and Biotic Stress Perception and Response

(2014) Richard M. Bostock et al.   Annual Review of Phytopathology

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency

(2014) Henning Frerigmann et al.   Frontiers in Plant Science

TGA transcription factors and jasmonate-independent COI1 signalling regulate specific plant responses to reactive oxylipins

(2013) Henrik U. Stotz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of metagenes and their Interactions through Large-scale Analysis of Arabidopsis Gene Expression Data

(2012) Tyler J Wilson et al.   BMC GENOMICS

Genome-Wide Identification of Regulatory DNA Elements and Protein-Binding Footprints Using Signatures of Open Chromatin in Arabidopsis

(2012) W. Zhang et al.   PLANT CELL

Prediction of transcriptional regulatory elements for plant hormone responses based on microarray data

(2011) Yoshiharu Y Yamamoto et al.   BMC PLANT BIOLOGY

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence

(2011) Patricia J. Wittkopp et al.   NATURE REVIEWS GENETICS

The Arabidopsis JAZ2 Promoter Contains a G-Box and Thymidine-Rich Module that are Necessary and Sufficient for Jasmonate-Dependent Activation by MYC Transcription Factors and Repression by JAZ Proteins

(2011) Pablo Figueroa et al.   PLANT AND CELL PHYSIOLOGY

TheArabidopsisbHLH Transcription Factors MYC3 and MYC4 Are Targets of JAZ Repressors and Act Additively with MYC2 in the Activation of Jasmonate Responses

(2011) Patricia Fernández-Calvo et al.   PLANT CELL

Improved protein-binding microarrays for the identification of DNA-binding specificities of transcription factors

(2011) Marta Godoy et al.   PLANT JOURNAL

Rapid Assessment of Gene Function in the Circadian Clock Using Artificial MicroRNA in Arabidopsis Mesophyll Protoplasts

(2010) J. Kim et al.   PLANT PHYSIOLOGY

Roles for Arabidopsis CAMTA Transcription Factors in Cold-Regulated Gene Expression and Freezing Tolerance

(2009) C. J. Doherty et al.   PLANT CELL

A rapid wound signal activates the systemic synthesis of bioactive jasmonates in Arabidopsis

(2009) Abraham J.K. Koo et al.   PLANT JOURNAL

The WUS homeobox-containing (WOX) protein family

(2009) Eric van der Graaff et al.   GENOME BIOLOGY

RNA-binding proteins and post-transcriptional gene regulation

(2008) Tina Glisovic et al.   FEBS LETTERS

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

(2008) Hideki Goda et al.   PLANT JOURNAL

Regulation and Function of Arabidopsis JASMONATE ZIM-Domain Genes in Response to Wounding and Herbivory

(2008) H. S. Chung et al.   PLANT PHYSIOLOGY

Plant Immunity to Insect Herbivores

(2007) Gregg A. Howe et al.   Annual Review of Plant Biology

Argonaute proteins: key players in RNA silencing

(2007) Gyorgy Hutvagner et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY