Direct antimicrobial resistance prediction from clinical MALDI-TOF mass spectra using machine learning
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Title
Direct antimicrobial resistance prediction from clinical MALDI-TOF mass spectra using machine learning
Authors
Keywords
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Journal
NATURE MEDICINE
Volume 28, Issue 1, Pages 164-174
Publisher
Springer Science and Business Media LLC
Online
2022-01-11
DOI
10.1038/s41591-021-01619-9
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Note: Only part of the references are listed.- Factors Associated With MALDI-TOF Mass Spectral Quality of Species Identification in Clinical Routine Diagnostics
- (2021) Aline Cuénod et al. Frontiers in Cellular and Infection Microbiology
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- (2020) Ana Paula Cury et al. JOURNAL OF MICROBIOLOGICAL METHODS
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- (2020) C.V. Weis et al. CLINICAL MICROBIOLOGY AND INFECTION
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- (2020) Caroline Weis et al. BIOINFORMATICS
- A large-scale investigation and identification of methicillin-resistant Staphylococcus aureus based on peaks binning of matrix-assisted laser desorption ionization-time of flight MS spectra
- (2020) Hsin-Yao Wang et al. BRIEFINGS IN BIOINFORMATICS
- A multiplex polymerase chain reaction assay for antibiotic stewardship in suspected pneumonia
- (2020) Chiagozie Pickens et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- Current status of MALDI-TOF mass spectrometry in clinical microbiology
- (2019) Tsung-Yun Hou et al. JOURNAL OF FOOD AND DRUG ANALYSIS
- Evaluation of Staphylococcus aureus Subtyping Module for Methicillin-Resistant Staphylococcus aureus Detection Based on Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry
- (2019) Yanyan Hu et al. Frontiers in Microbiology
- Rapid Discrimination of Methicillin-Resistant Staphylococcus aureus by MALDI-TOF MS
- (2019) Kim et al. Pathogens
- Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis
- (2018) Alessandro Cassini et al. LANCET INFECTIOUS DISEASES
- Global epidemiology of CTX-M β-lactamases: temporal and geographical shifts in genotype
- (2017) Edward R. Bevan et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Time to Treatment and Mortality during Mandated Emergency Care for Sepsis
- (2017) Christopher W. Seymour et al. NEW ENGLAND JOURNAL OF MEDICINE
- Molecular characterisation of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli isolates from hospital and ambulatory patients in Germany
- (2017) Michael Pietsch et al. VETERINARY MICROBIOLOGY
- Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry in Clinical Microbiology: What Are the Current Issues?
- (2017) Alex van Belkum et al. Annals of Laboratory Medicine
- Genetic antimicrobial susceptibility testing in Gram-negative sepsis - impact on time to results in a routine laboratory
- (2016) Øyvind Kommedal et al. APMIS
- Automated categorization of methicillin-resistant Staphylococcus aureus clinical isolates into different clonal complexes by MALDI-TOF mass spectrometry
- (2016) M. Camoez et al. CLINICAL MICROBIOLOGY AND INFECTION
- The presence of a single MALDI-TOF mass spectral peak predicts methicillin resistance in staphylococci
- (2016) Daniel D. Rhoads et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- Matrix-assisted laser desorption ionization-time of flight Mass spectrometry can detect Staphylococcus aureus clonal complex 398
- (2016) Marlène Sauget et al. JOURNAL OF MICROBIOLOGICAL METHODS
- The Technical and Biological Reproducibility of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) Based Typing: Employment of Bioinformatics in a Multicenter Study
- (2016) Michael Oberle et al. PLoS One
- Randomized Trial of Rapid Multiplex Polymerase Chain Reaction–Based Blood Culture Identification and Susceptibility Testing
- (2015) Ritu Banerjee et al. CLINICAL INFECTIOUS DISEASES
- Rapid first-line discrimination of methicillin resistant Staphylococcus aureus strains using MALDI-TOF MS
- (2015) Claus Østergaard et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Detection of Escherichia coli sequence type 131 by matrix-assisted laser desorption ionization time-of-flight mass spectrometry: implications for infection control policies?
- (2015) J. Lafolie et al. JOURNAL OF HOSPITAL INFECTION
- Analysis of methicillin-resistant Staphylococcus aureus major clonal lineages by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry (MALDI–TOF MS)
- (2015) Tingting Zhang et al. JOURNAL OF MICROBIOLOGICAL METHODS
- The quantitative and condition-dependent Escherichia coli proteome
- (2015) Alexander Schmidt et al. NATURE BIOTECHNOLOGY
- The Fast Route to Microbe Identification
- (2015) Alexa Dierig et al. PEDIATRIC INFECTIOUS DISEASE JOURNAL
- PBP2a Mutations Causing High-Level Ceftaroline Resistance in Clinical Methicillin-Resistant Staphylococcus aureus Isolates
- (2014) S. Wesley Long et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Identification of agr-positive methicillin-resistant Staphylococcus aureus harbouring the class A mec complex by MALDI-TOF mass spectrometry
- (2014) Michaele Josten et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Real-Time PCR Assay for Detection of blaZ Genes in Staphylococcus aureus Clinical Isolates
- (2014) L. A. Pereira et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Impact of Rapid Organism Identification via Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Combined With Antimicrobial Stewardship Team Intervention in Adult Patients With Bacteremia and Candidemia
- (2013) Angela M. Huang et al. CLINICAL INFECTIOUS DISEASES
- Intercontinental spread of OXA-48 beta-lactamase-producing Enterobacteriaceae over a 11-year period, 2001 to 2011
- (2013) A Potron et al. Eurosurveillance
- Analysis of the Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrum of Staphylococcus aureus Identifies Mutations That Allow Differentiation of the Main Clonal Lineages
- (2013) M. Josten et al. JOURNAL OF CLINICAL MICROBIOLOGY
- MALDIquant: a versatile R package for the analysis of mass spectrometry data
- (2012) S. Gibb et al. BIOINFORMATICS
- Methicillin-resistantStaphylococcus aureusin Nasal Surveillance Swabs at an Intensive Care Unit: An Evaluation of the LightCycler MRSA Advanced Test
- (2012) Hee Jin Huh et al. Annals of Laboratory Medicine
- Use of the MALDI BioTyper system with MALDI–TOF mass spectrometry for rapid identification of microorganisms
- (2011) Kazuyuki Sogawa et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Distribution and Regulation of the Mobile Genetic Element-Encoded Phenol-Soluble Modulin PSM-mec in Methicillin-Resistant Staphylococcus aureus
- (2011) Som S. Chatterjee et al. PLoS One
- Rapid detection of vancomycin-resistant enterococci from rectal swabs by the Cepheid Xpert vanA/vanB assay
- (2010) Nancy Bourdon et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages
- (2010) Manuel Wolters et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
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