Genome-edited powdery mildew resistance in wheat without growth penalties

Genome engineering for crop improvement and future agriculture

(2021) Caixia Gao   CELL

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Exploiting Broad-Spectrum Disease Resistance in Crops: From Molecular Dissection to Breeding

(2020) Wei Li et al.   Annual Review of Plant Biology

GM approaches to improve disease resistance in crops

(2019) H. Peter van Esse et al.   NEW PHYTOLOGIST

4C-seq from start to end: a detailed protocol for sample preparation and data analysis

(2019) Peter H.L. Krijger et al.   METHODS

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Broad-spectrum resistance to bacterial blight in rice using genome editing

(2019) Ricardo Oliva et al.   NATURE BIOTECHNOLOGY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

(2018) Cyrille Saintenac et al.   NATURE GENETICS

Genome editing of bread wheat using biolistic delivery of CRISPR/Cas9 in vitro transcripts or ribonucleoproteins

(2018) Zhen Liang et al.   Nature Protocols

The transcriptional landscape of polyploid wheat

(2018) R. H. Ramírez-González et al.   SCIENCE

mlo-Based Resistance: An Apparently Universal “Weapon” to Defeat Powdery Mildew Disease

(2017) Stefan Kusch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis

(2017) Jun Xiao et al.   NATURE GENETICS

Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance

(2017) Yiwen Deng et al.   SCIENCE

Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes

(2017) Zhen Liang et al.   Nature Communications

Disease Impact on Wheat Yield Potential and Prospects of Genetic Control

(2016) Ravi P. Singh et al.   Annual Review of Phytopathology

mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach

(2016) Johanna Acevedo-Garcia et al.   PLANT BIOTECHNOLOGY JOURNAL

MYB75 Phosphorylation by MPK4 Is Required for Light-Induced Anthocyanin Accumulation in Arabidopsis

(2016) Shengnan Li et al.   PLANT CELL

Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA

(2016) Yi Zhang et al.   Nature Communications

Characterization and fine mapping of a novel barley Stage Green-Revertible Albino Gene (HvSGRA) by Bulked Segregant Analysis based on SSR assay and Specific Length Amplified Fragment Sequencing

(2015) Dandan Qin et al.   BMC GENOMICS

Monocot and dicot MLO powdery mildew susceptibility factors are functionally conserved in spite of the evolution of class-specific molecular features

(2015) Michela Appiano et al.   BMC PLANT BIOLOGY

Wheat Stripe Rust Resistance Protein WKS1 Reduces the Ability of the Thylakoid-Associated Ascorbate Peroxidase to Detoxify Reactive Oxygen Species

(2015) Jin-Ying Gou et al.   PLANT CELL

Susceptibility Genes 101: How to Be a Good Host

(2014) Chris C.N. van Schie et al.   Annual Review of Phytopathology

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew

(2014) Yanpeng Wang et al.   NATURE BIOTECHNOLOGY

Magical mystery tour: MLO proteins in plant immunity and beyond

(2014) Johanna Acevedo-Garcia et al.   NEW PHYTOLOGIST

deepTools: a flexible platform for exploring deep-sequencing data

(2014) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Genetic and physical mapping of powdery mildew resistance gene MlHLT in Chinese wheat landrace Hulutou

(2014) Zhenzhong Wang et al.   THEORETICAL AND APPLIED GENETICS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Targeted genome modification of crop plants using a CRISPR-Cas system

(2013) Qiwei Shan et al.   NATURE BIOTECHNOLOGY

Pivoting the Plant Immune System from Dissection to Deployment

(2013) J. L. Dangl et al.   SCIENCE

Susceptibility to plant disease: more than a failure of host immunity

(2013) Dmitry Lapin et al.   TRENDS IN PLANT SCIENCE

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

TAL Effectors: Customizable Proteins for DNA Targeting

(2011) A. J. Bogdanove et al.   SCIENCE

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

Utility of leaf senescence-associated gene homologs as developmental markers in common wheat

(2010) Tomonori Kajimura et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identification and validation of reference genes for quantitative RT-PCR normalization in wheat

(2009) Anna R Paolacci et al.   BMC MOLECULAR BIOLOGY

Tryptophan-Derived Metabolites Are Required for Antifungal Defense in the Arabidopsis mlo2 Mutant

(2009) C. Consonni et al.   PLANT PHYSIOLOGY

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

(2008) Zhongfu Ni et al.   NATURE

Naturally Occurring Broad-Spectrum Powdery Mildew Resistance in a Central American Tomato Accession Is Caused by Loss of Mlo Function

(2007) Yuling Bai et al.   MOLECULAR PLANT-MICROBE INTERACTIONS