Simple oligonucleotide-based multiplexing of single-cell chromatin accessibility
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Title
Simple oligonucleotide-based multiplexing of single-cell chromatin accessibility
Authors
Keywords
SNuBar, single-cell multiplexing, single-cell multiomics multiplexing, single-cell ATAC sequencing, single-cell multiomics sequencing, spatial epigenetic heterogeneity, multiplexing therapy combinations, cell-type-specific transcription factors
Journal
MOLECULAR CELL
Volume 81, Issue 20, Pages 4319-4332.e10
Publisher
Elsevier BV
Online
2021-10-22
DOI
10.1016/j.molcel.2021.09.026
References
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- High-throughput chromatin accessibility profiling at single-cell resolution
- (2018) Anja Mezger et al. Nature Communications
- A rapid and robust method for single cell chromatin accessibility profiling
- (2018) Xi Chen et al. Nature Communications
- Multiplexed droplet single-cell RNA-sequencing using natural genetic variation
- (2017) Hyun Min Kang et al. NATURE BIOTECHNOLOGY
- chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
- (2017) Alicia N Schep et al. NATURE METHODS
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- (2013) J Puccini et al. CELL DEATH AND DIFFERENTIATION
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- Over-Expression of LSD1 Promotes Proliferation, Migration and Invasion in Non-Small Cell Lung Cancer
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- (2010) Li Chen et al. JOURNAL OF CELL BIOLOGY
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- Decreased expression of the SIN3A gene, a candidate tumor suppressor located at the prevalent allelic loss region 15q23 in non-small cell lung cancer
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