Metabolic flux analysis of the non-transitory starch tradeoff for lipid production in mature tobacco leaves

Non-conventional pathways enable pennycress (Thlaspi arvense L.) embryos to achieve high efficiency of oil biosynthesis

(2020) Enkhtuul Tsogtbaatar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Increasing growth and yield by altering carbon metabolism in a transgenic leaf oil crop

(2020) Madeline C. Mitchell et al.   PLANT BIOTECHNOLOGY JOURNAL

A General Method for Quantification and Discovery of Acyl Groups Attached to Acyl Carrier Proteins in Fatty Acid Metabolism using LC-MS/MS

(2020) Jeong-Won Nam et al.   PLANT CELL

Lipid droplets in plants and algae: Distribution, formation, turnover and function

(2020) Till Ischebeck et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Towards oilcane: Engineering hyperaccumulation of triacylglycerol into sugarcane stems

(2020) Saroj Parajuli et al.   Global Change Biology Bioenergy

Source of 12C in Calvin–Benson cycle intermediates and isoprene emitted from plant leaves fed with 13CO2

(2020) Thomas D. Sharkey et al.   BIOCHEMICAL JOURNAL

Docking of acetyl-CoA carboxylase to the plastid envelope membrane attenuates fatty acid production in plants

(2020) Yajin Ye et al.   Nature Communications

Mouse lipogenic proteins promote the co-accumulation of triacylglycerols and sesquiterpenes in plant cells

(2019) Yingqi Cai et al.   PLANTA

Triose phosphate utilization and beyond: from photosynthesis to end product synthesis

(2019) Alan M McClain et al.   JOURNAL OF EXPERIMENTAL BOTANY

Contribution and consequences of xylem‐transported CO 2 assimilation for C 3 plants

(2019) Samantha S. Stutz et al.   NEW PHYTOLOGIST

Accurate and efficient amino acid analysis for protein quantification using hydrophilic interaction chromatography coupled tandem mass spectrometry

(2019) Shrikaar Kambhampati et al.   Plant Methods

Metabolic engineering for enhanced oil in biomass

(2019) Thomas Vanhercke et al.   PROGRESS IN LIPID RESEARCH

Cyanobacterial carboxysome mutant analysis reveals the influence of enzyme compartmentalization on cellular metabolism and metabolic network rigidity

(2019) Mary H. Abernathy et al.   METABOLIC ENGINEERING

A Combined Metabolomics and Fluxomics Analysis Identifies Steps Limiting Oil Synthesis in Maize Embryos

(2019) Jean-Christophe Cocuron et al.   PLANT PHYSIOLOGY

Storing carbon in leaf lipid sinks enhanced perennial ryegrass carbon capture especially under high N and elevated CO2

(2019) Z Beechey-Gradwell et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reorganization of Acyl Flux through the Lipid Metabolic Network in Oil-Accumulating Tobacco Leaves

(2019) Xue-Rong Zhou et al.   PLANT PHYSIOLOGY

Tracing metabolic flux through time and space with isotope labeling experiments

(2019) Doug K Allen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Up-regulation of lipid biosynthesis increases the oil content in leaves of Sorghum bicolor

(2018) Thomas Vanhercke et al.   PLANT BIOTECHNOLOGY JOURNAL

Diacylglycerol acyltransferase 1 contributes to freezing tolerance

(2018) Steven A. Arisz et al.   PLANT PHYSIOLOGY

Measurement of Starch: Critical Evaluation of Current Methodology

(2018) Barry V. McCleary et al.   STARCH-STARKE

Seeds as oil factories

(2018) Sébastien Baud   Plant Reproduction

Vacuolar sucrose cleavage prevents limitation of cytosolic carbohydrate metabolism and stabilizes photosynthesis under abiotic stress

(2018) Jakob Weiszmann et al.   FEBS Journal

Starch Deficiency Enhances Lipid Biosynthesis and Turnover in Leaves

(2018) Linhui Yu et al.   PLANT PHYSIOLOGY

High-performance serial block-face SEM of nonconductive biological samples enabled by focal gas injection-based charge compensation

(2017) T.J. DEERINCK et al.   JOURNAL OF MICROSCOPY

Step changes in leaf oil accumulation via iterative metabolic engineering

(2017) Thomas Vanhercke et al.   METABOLIC ENGINEERING

Direct assessment of the metabolic origin of carbon atoms in glutamate from illuminated leaves using 13 C-NMR

(2017) Cyril Abadie et al.   NEW PHYTOLOGIST

Photosynthate partitioning to starch in Arabidopsis thaliana is insensitive to light intensity but sensitive to photoperiod due to a restriction on growth in the light in short photoperiods

(2017) Virginie Mengin et al.   PLANT CELL AND ENVIRONMENT

Sugar Potentiation of Fatty Acid and Triacylglycerol Accumulation

(2017) Zhiyang Zhai et al.   PLANT PHYSIOLOGY

Photosynthetic Trichomes Contain a Specific Rubisco with a Modified pH-Dependent Activity

(2017) Raphaëlle Laterre et al.   PLANT PHYSIOLOGY

A Central Role for Triacylglycerol in Membrane Lipid Breakdown, Fatty Acid β -Oxidation, and Plant Survival under Extended Darkness

(2017) Jilian Fan et al.   PLANT PHYSIOLOGY

Leaf Starch Turnover Occurs in Long Days and in Falling Light at the End of the Day

(2017) Olivier Fernandez et al.   PLANT PHYSIOLOGY

Diurnal Leaf Starch Content: An Orphan Trait in Forage Legumes

(2017) Michael Ruckle et al.   Agronomy-Basel

Triacylglycerol Metabolism, Function, and Accumulation in Plant Vegetative Tissues

(2016) Changcheng Xu et al.   Annual Review of Plant Biology

Assessing compartmentalized flux in lipid metabolism with isotopes

(2016) Doug K. Allen   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Quantifying plant phenotypes with isotopic labeling & metabolic flux analysis

(2016) Doug K Allen   CURRENT OPINION IN BIOTECHNOLOGY

Metabolite pools and carbon flow during C4photosynthesis in maize:13CO2labeling kinetics and cell type fractionation

(2016) Stéphanie Arrivault et al.   JOURNAL OF EXPERIMENTAL BOTANY

Starch Accumulation in the Bundle Sheaths of C3Plants: A Possible Pre-Condition for C4Photosynthesis

(2016) Hiroshi Miyake   PLANT AND CELL PHYSIOLOGY

Reproductive failure inArabidopsis thalianaunder transient carbohydrate limitation: flowers and very young siliques are jettisoned and the meristem is maintained to allow successful resumption of reproductive growth

(2016) Martin A. Lauxmann et al.   PLANT CELL AND ENVIRONMENT

Differential Contribution of Malic Enzymes during Soybean and Castor Seeds Maturation

(2016) Mariel Claudia Gerrard Wheeler et al.   PLoS One

The glucose 6-phosphate shunt around the Calvin–Benson cycle

(2015) Thomas D. Sharkey et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolic engineering of sugarcane to accumulate energy-dense triacylglycerols in vegetative biomass

(2015) Janice Zale et al.   PLANT BIOTECHNOLOGY JOURNAL

Quantitative Multilevel Analysis of Central Metabolism in Developing Oilseeds of Oilseed Rape during in Vitro Culture

(2015) Jörg Schwender et al.   PLANT PHYSIOLOGY

Tracking the metabolic pulse of plant lipid production with isotopic labeling and flux analyses: Past, present and future

(2015) Doug K. Allen et al.   PROGRESS IN LIPID RESEARCH

Large-volume en-bloc staining for electron microscopy-based connectomics

(2015) Yunfeng Hua et al.   Nature Communications

Selecting the Correct Weighting Factors for Linear and Quadratic Calibration Curves with Least-Squares Regression Algorithm in Bioanalytical LC-MS/MS Assays and Impacts of Using Incorrect Weighting Factors on Curve Stability, Data Quality, and Assay Performance

(2014) Huidong Gu et al.   ANALYTICAL CHEMISTRY

INCA: a computational platform for isotopically non-stationary metabolic flux analysis

(2014) J. D. Young   BIOINFORMATICS

A high throughput gas exchange screen for determining rates of photorespiration or regulation of C4 activity

(2014) C. Bellasio et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolic flux phenotype of tobacco hairy roots engineered for increased geraniol production

(2014) Shyam K. Masakapalli et al.   PHYTOCHEMISTRY

Arabidopsis Lipins, PDAT1 Acyltransferase, and SDP1 Triacylglycerol Lipase Synergistically Direct Fatty Acids toward  -Oxidation, Thereby Maintaining Membrane Lipid Homeostasis

(2014) J. Fan et al.   PLANT CELL

Relationship between starch degradation and carbon demand for maintenance and growth inArabidopsis thalianain different irradiance and temperature regimes

(2014) SARAH M. PILKINGTON et al.   PLANT CELL AND ENVIRONMENT

Isotopically nonstationary13C flux analysis of changes inArabidopsis thalianaleaf metabolism due to high light acclimation

(2014) Fangfang Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synergistic effect of WRI1 and DGAT1 coexpression on triacylglycerol biosynthesis in plants

(2013) Thomas Vanhercke et al.   FEBS LETTERS

Arabidopsis Coordinates the Diurnal Regulation of Carbon Allocation and Growth across a Wide Range of Photoperiods

(2013) Ronan Sulpice et al.   Molecular Plant

Metabolic engineering of biomass for high energy density: oilseed-like triacylglycerol yields from plant leaves

(2013) Thomas Vanhercke et al.   PLANT BIOTECHNOLOGY JOURNAL

Metabolic Fluxes in an Illuminated Arabidopsis Rosette

(2013) M. Szecowka et al.   PLANT CELL

Temperature response ofin vivo Rubisco kinetics and mesophyll conductance inArabidopsis thaliana: comparisons toNicotiana tabacum

(2013) BERKLEY WALKER et al.   PLANT CELL AND ENVIRONMENT

The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a complex response to changes in nitrogen supply

(2013) Shyam K. Masakapalli et al.   PLANT JOURNAL

Carbon and Nitrogen Provisions Alter the Metabolic Flux in Developing Soybean Embryos

(2013) D. K. Allen et al.   PLANT PHYSIOLOGY

In Vivo Packaging of Triacylglycerols Enhances Arabidopsis Leaf Biomass and Energy Density

(2013) S. Winichayakul et al.   PLANT PHYSIOLOGY

The SUGAR-DEPENDENT1 Lipase Limits Triacylglycerol Accumulation in Vegetative Tissues of Arabidopsis

(2013) A. A. Kelly et al.   PLANT PHYSIOLOGY

Arabidopsis plants perform arithmetic division to prevent starvation at night

(2013) Antonio Scialdone et al.   eLife

Role of metabolite transporters in source-sink carbon allocation

(2013) Frank Ludewig et al.   Frontiers in Plant Science

Starch turnover: pathways, regulation and role in growth

(2012) Mark Stitt et al.   CURRENT OPINION IN PLANT BIOLOGY

Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis

(2011) Jamey D. Young et al.   METABOLIC ENGINEERING

Increasing the energy density of vegetative tissues by diverting carbon from starch to oil biosynthesis in transgenic Arabidopsis

(2011)   Sanjaya et al.   PLANT BIOTECHNOLOGY JOURNAL

Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves

(2011) Nadja Hädrich et al.   PLANT JOURNAL

Isoleucine 309 acts as a C4 catalytic switch that increases ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) carboxylation rate in Flaveria

(2011) S. M. Whitney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning

(2011) F. Bourgis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Starch and the clock: the dark side of plant productivity

(2011) Alexander Graf et al.   TRENDS IN PLANT SCIENCE

The Metabolite Transporters of the Plastid Envelope: An Update

(2011) Fabio Facchinelli et al.   Frontiers in Plant Science

Starch: Its Metabolism, Evolution, and Biotechnological Modification in Plants

(2010) Samuel C. Zeeman et al.   Annual Review of Plant Biology

Elevation of oil body integrity and emulsion stability by polyoleosins, multiple oleosin units joined in tandem head-to-tail fusions

(2010) Richard W. Scott et al.   PLANT BIOTECHNOLOGY JOURNAL

A Suite of Lotus japonicus Starch Mutants Reveals Both Conserved and Novel Features of Starch Metabolism

(2010) C. Vriet et al.   PLANT PHYSIOLOGY

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

(2010) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Physiological and developmental regulation of seed oil production

(2010) Sébastien Baud et al.   PROGRESS IN LIPID RESEARCH

Increasing the flow of carbon into seed oil

(2009) Randall J. Weselake et al.   BIOTECHNOLOGY ADVANCES

Molecular and functional characterization of the plastid-localized Phosphoenolpyruvate enolase (ENO1) fromArabidopsis thaliana

(2009) Veena Prabhakar et al.   FEBS LETTERS

Metabolic turnover analysis by a combination of in vivo13C-labelling from 13CO2 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C3 photosynthetic pathway in Nicotiana tabacum leaves

(2009) Tomohisa Hasunuma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Oil accumulation in leaves directed by modification of fatty acid breakdown and lipid synthesis pathways

(2009) Steve P. Slocombe et al.   PLANT BIOTECHNOLOGY JOURNAL

Tobacco as a production platform for biofuel: overexpression ofArabidopsis DGATandLEC2genes increases accumulation and shifts the composition of lipids in green biomass

(2009) Vyacheslav Andrianov et al.   PLANT BIOTECHNOLOGY JOURNAL

Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply whenArabidopsisis grown in very short photoperiods

(2009) YVES GIBON et al.   PLANT CELL AND ENVIRONMENT

Role of WRINKLED1 in the transcriptional regulation of glycolytic and fatty acid biosynthetic genes in Arabidopsis

(2009) Sébastien Baud et al.   PLANT JOURNAL

Analysis of Metabolic Flux Phenotypes for Two Arabidopsis Mutants with Severe Impairment in Seed Storage Lipid Synthesis

(2009) J. Lonien et al.   PLANT PHYSIOLOGY

Turnover of Fatty Acids during Natural Senescence of Arabidopsis, Brachypodium, and Switchgrass and in Arabidopsis  -Oxidation Mutants

(2009) Z. Yang et al.   PLANT PHYSIOLOGY

In Folio Respiratory Fluxomics Revealed by 13C Isotopic Labeling and H/D Isotope Effects Highlight the Noncyclic Nature of the Tricarboxylic Acid "Cycle" in Illuminated Leaves

(2009) G. Tcherkez et al.   PLANT PHYSIOLOGY

Nicotiana tabacum NADP-Malic Enzyme: Cloning, Characterization and Analysis of Biological Role

(2008) Gabriela Leticia Müller et al.   PLANT AND CELL PHYSIOLOGY

Plant triacylglycerols as feedstocks for the production of biofuels

(2008) Timothy P. Durrett et al.   PLANT JOURNAL

The role of light in soybean seed filling metabolism

(2008) Doug K. Allen et al.   PLANT JOURNAL