Protist.guru: a comparative transcriptomics database for protists

Unveiling the underlying molecular basis of astaxanthin accumulation in Haematococcus through integrative metabolomic-transcriptomic analysis

(2021) Cristina Hoys et al.   BIORESOURCE TECHNOLOGY

LSTrAP-Cloud: A User-Friendly Cloud Computing Pipeline to Infer Coexpression Networks

(2020) Qiao Wen Tan et al.   Genes

A novel approach to enhance astaxanthin production in Haematococcus lacustris using a microstructure-based culture platform

(2019) Sang-Il Han et al.   Algal Research-Biomass Biofuels and Bioproducts

Global Trends in Marine Plankton Diversity across Kingdoms of Life

(2019) Federico M. Ibarbalz et al.   CELL

CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses

(2018) Sebastian Proost et al.   NUCLEIC ACIDS RESEARCH

PhytoNet: comparative co-expression network analyses across phytoplankton and land plants

(2018) Camilla Ferrari et al.   NUCLEIC ACIDS RESEARCH

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

(2017) Frédéric Mahé et al.   Nature Ecology & Evolution

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

A Review on the Assessment of Stress Conditions for Simultaneous Production of Microalgal Lipids and Carotenoids

(2016) Amritpreet K. Minhas et al.   Frontiers in Microbiology

Astaxanthin-Producing Green Microalga Haematococcus pluvialis: From Single Cell to High Value Commercial Products

(2016) Md. Mahfuzur R. Shah et al.   Frontiers in Plant Science

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Molecular mechanisms of the coordination between astaxanthin and fatty acid biosynthesis inHaematococcus pluvialis(Chlorophyceae)

(2014) Guanqun Chen et al.   PLANT JOURNAL

The others: our biased perspective of eukaryotic genomes

(2014) Javier del Campo et al.   TRENDS IN ECOLOGY & EVOLUTION

Towards revealing the functions of all genes in plants

(2013) Seung Yon Rhee et al.   TRENDS IN PLANT SCIENCE

Isolation of a Novel Oil Globule Protein from the Green Alga Haematococcus pluvialis (Chlorophyceae)

(2011) Ehud Peled et al.   LIPIDS

PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species

(2011) M. Mutwil et al.   PLANT CELL

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Assembly of an Interactive Correlation Network for the Arabidopsis Genome Using a Novel Heuristic Clustering Algorithm

(2009) M. Mutwil et al.   PLANT PHYSIOLOGY

GeneCAT—novel webtools that combine BLAST and co-expression analyses

(2008) Marek Mutwil et al.   NUCLEIC ACIDS RESEARCH