Microbiome composition resulting from different substrates influences trichloroethene dechlorination performance

Respiratory Vinyl Chloride Reductive Dechlorination to Ethene in TceA-Expressing Dehalococcoides mccartyi

(2021) Jun Yan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Influence of non-dechlorinating microbes on trichloroethene reduction based on vitamin B12 synthesis in anaerobic cultures

(2020) Li-Lian Wen et al.   ENVIRONMENTAL POLLUTION

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Genomic Characteristics Distinguish Geographically Distributed Dehalococcoidia

(2020) Yi Yang et al.   Frontiers in Microbiology

A general framework for quantitatively assessing ecological stochasticity

(2019) Daliang Ning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering microbiomes in anaerobic reactors with superior trichloroethylene dechlorination performance at low pH conditions

(2019) Wei-Yu Chen et al.   ENVIRONMENTAL POLLUTION

Addition of Shewanella oneidensis MR-1 to the Dehalococcoides-containing culture enhances the trichloroethene dechlorination

(2019) Yaru Li et al.   ENVIRONMENT INTERNATIONAL

Environmental selection shapes the formation of near-surface groundwater microbiomes

(2019) Lijuan Yan et al.   WATER RESEARCH

Electron transport chains in organohalide-respiring bacteria and bioremediation implications

(2018) Shanquan Wang et al.   BIOTECHNOLOGY ADVANCES

Exploring the links between groundwater quality and bacterial communities near oil and gas extraction activities

(2018) Inês C. Santos et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Geochemical Parameters and Reductive Dechlorination Determine Aerobic Cometabolic vs Aerobic Metabolic Vinyl Chloride Biodegradation at Oxic/Anoxic Interface of Hyporheic Zones

(2017) Siavash Atashgahi et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes

(2017) Yi Yang et al.   ISME Journal

Soil and brownfield bioremediation

(2017) Mallavarapu Megharaj et al.   Microbial Biotechnology

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Analysis of trichloroethylene removal and bacterial community function based on pH-adjusted in an upflow anaerobic sludge blanket reactor

(2015) Ying Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Trichloroethylene removal and bacterial variations in the up-flow anaerobic sludge blanket reactor in response to temperature shifts

(2015) Ying Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The roles of methanogens and acetogens in dechlorination of trichloroethene using different electron donors

(2015) Li-Lian Wen et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Anaerobic biosynthesis of the lower ligand of vitamin B12

(2015) Amrita B. Hazra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of hydraulic retention time (HRT) on the biodegradation of trichloroethylene wastewater and anaerobic bacterial community in the UASB reactor

(2014) Ying Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pyrosequencing Analysis Reveals High Population Dynamics of the Soil Microcosm Degrading Octachlorodibenzofuran

(2014) Wei-Yu Chen et al.   MICROBES AND ENVIRONMENTS

Acclimation of the trichloroethylene-degrading anaerobic granular sludge and the degradation characteristics in an upflow anaerobic sludge blanket reactor

(2014) Ying Zhang et al.   WATER SCIENCE AND TECHNOLOGY

Successful operation of continuous reactors at short retention times results in high-density, fast-rate Dehalococcoides dechlorinating cultures

(2013) Anca G. Delgado et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions

(2013) Yujie Men et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Guided cobalamin biosynthesis supports Dehalococcoides mccartyi reductive dechlorination activity

(2013) J. Yan et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Organic cofactors in the metabolism of Dehalococcoides mccartyi strains

(2013) C. J. Schipp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Versatility in Corrinoid Salvaging and Remodeling Pathways Supports Corrinoid-Dependent Metabolism in Dehalococcoides mccartyi

(2012) Shan Yi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Application of enhanced bioremediation for TCE-contaminated groundwater: a pilot-scale study

(2012) Y.C. Kuo et al.   Desalination and Water Treatment

Biodegradation of trichloroethylene in anaerobic hybrid reactor

(2012) Shibam Mitra et al.   Environmental Progress & Sustainable Energy

Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi

(2012) F. E. Loffler et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Selective Utilization of Exogenous Amino Acids by Dehalococcoides ethenogenes Strain 195 and Its Effects on Growth and Dechlorination Activity

(2011) Wei-Qin Zhuang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temperature dependent (37–15°C) anaerobic digestion of a trichloroethylene-contaminated wastewater

(2011) Alma Siggins et al.   BIORESOURCE TECHNOLOGY

Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses

(2011) Yujie Men et al.   ISME Journal

Methanogenic community development in anaerobic granular bioreactors treating trichloroethylene (TCE)-contaminated wastewater at 37 °C and 15 °C

(2011) Alma Siggins et al.   WATER RESEARCH

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Comparison of lactate, formate, and propionate as hydrogen donors for the reductive dehalogenation of trichloroethene in a continuous-flow column

(2010) Mohammad F. Azizian et al.   JOURNAL OF CONTAMINANT HYDROLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS