Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019

Whole-genome analysis of vancomycin-resistant Enterococcus faecium causing nosocomial outbreaks suggests the occurrence of few endemic clonal lineages in Bavaria, Germany

(2020) David Eisenberger et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Linezolid resistance in Enterococcus faecium and Enterococcus faecalis from hospitalized patients in Ireland: high prevalence of the MDR genes optrA and poxtA in isolates with diverse genetic backgrounds

(2020) Sarah A Egan et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Performance of commercial methods for linezolid susceptibility testing of Enterococcus faecium and Enterococcus faecalis

(2020) Loren Dejoies et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

(2020) Stéphanie Nouws et al.   Scientific Reports

Detection of Oxazolidinone Resistance Genes and Characterization of Genetic Environments in Enterococci of Swine Origin, Italy

(2020) Simona Fioriti et al.   Microorganisms

A core genome multilocus sequence typing (cgMLST) scheme for Enterococcus faecalis

(2019) Bernd Neumann et al.   JOURNAL OF CLINICAL MICROBIOLOGY

LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences

(2019) Henrik Hasman et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Detection of optrA-positive enterococci clinical isolates in Belgium

(2019) M. Angeles Argudín et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Validating a screening agar for linezolid-resistant enterococci

(2019) Guido Werner et al.   BMC INFECTIOUS DISEASES

SnapperDB: a database solution for routine sequencing analysis of bacterial isolates

(2018) Timothy Dallman et al.   BIOINFORMATICS

Characterization of poxtA, a novel phenicol–oxazolidinone–tetracycline resistance gene from an MRSA of clinical origin

(2018) Alberto Antonelli et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

(2018) Zhemin Zhou et al.   GENOME RESEARCH

Evaluation of Probiotic Properties and Safety of Enterococcus faecium Isolated From Artisanal Tunisian Meat “Dried Ossban”

(2018) Mohamed Zommiti et al.   Frontiers in Microbiology

Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom

(2018) Theodore Gouliouris et al.   mBio

Clinical case of cfr-positive MRSA CC398 in Belgium

(2017) H. Paridaens et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Novel multiresistance cfr plasmids in linezolid-resistant methicillin-resistant Staphylococcus epidermidis and vancomycin-resistant Enterococcus faecium (VRE) from a hospital outbreak: co-location of cfr and optrA in VRE

(2017) Alexandros Lazaris et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Retrospective analysis of genome sequences revealed the wide dissemination of optrA in Gram-positive bacteria

(2016) Jinhu Huang et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Co-location of the oxazolidinone resistance genesoptrAandcfron a multiresistance plasmid fromStaphylococcus sciuri

(2016) Dexi Li et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

ABC-F Proteins Mediate Antibiotic Resistance through Ribosomal Protection

(2016) Liam K. R. Sharkey et al.   mBio

A novel gene,optrA, that confers transferable resistance to oxazolidinones and phenicols and its presence inEnterococcus faecalisandEnterococcus faeciumof human and animal origin

(2015) Yang Wang et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium

(2015) Mark de Been et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes

(2015) Holly B Bratcher et al.   BMC GENOMICS

Population Biology of Intestinal Enterococcus Isolates from Hospitalized and Nonhospitalized Individuals in Different Age Groups

(2014) Ana P. Tedim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Food and human gut as reservoirs of transferable antibiotic resistance encoding genes

(2013) Jean-Marc Rolain   Frontiers in Microbiology

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Enterococci of animal origin and their significance for public health

(2012) A.M. Hammerum   CLINICAL MICROBIOLOGY AND INFECTION

Intensive care unit dissemination of multiple clones of linezolid-resistant Enterococcus faecalis and Enterococcus faecium

(2012) E. Ntokou et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

(2012) K. A. Jolley et al.   MICROBIOLOGY-SGM

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH