LSSmScarlet, dCyRFP2s, dCyOFP2s and CRISPRed2s, Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift

Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein

(2020) Oksana M. Subach et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A set of monomeric near-infrared fluorescent proteins for multicolor imaging across scales

(2020) Mikhail E. Matlashov et al.   Nature Communications

Belok/XSA Diffraction Beamline for Studying Crystalline Samples at Kurchatov Synchrotron Radiation Source

(2020) Roman D. Svetogorov et al.   CRYSTAL RESEARCH AND TECHNOLOGY

TeraChem : A graphical processing unit ‐accelerated electronic structure package for large‐scale ab initio molecular dynamics

(2020) Stefan Seritan et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

GAF-CaMP3–sfGFP, An Enhanced Version of the Near-Infrared Genetically Encoded Positive Phytochrome-Based Calcium Indicator for the Visualization of Neuronal Activity

(2020) Oksana M. Subach et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

mGreenLantern: a bright monomeric fluorescent protein with rapid expression and cell filling properties for neuronal imaging

(2020) Benjamin C. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Slowly Reducible Genetically Encoded Green Fluorescent Indicator for In Vivo and Ex Vivo Visualization of Hydrogen Peroxide

(2019) Oksana M. Subach et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Near-Infrared Genetically Encoded Positive Calcium Indicator Based on GAF-FP Bacterial Phytochrome

(2019) Oksana M. Subach et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

NAMD goes quantum: an integrative suite for hybrid simulations

(2018) Marcelo C R Melo et al.   NATURE METHODS

DIALS: implementation and evaluation of a new integration package

(2018) Graeme Winter et al.   Acta Crystallographica Section D-Structural Biology

Systematic characterization of maturation time of fluorescent proteins in living cells

(2017) Enrique Balleza et al.   NATURE METHODS

Characterizing the Structures, Spectra, and Energy Landscapes Involved in the Excited-State Proton Transfer Process of Red Fluorescent Protein LSSmKate1

(2016) Fasheng Chen et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo

(2016) Jun Chu et al.   NATURE BIOTECHNOLOGY

mScarlet: a bright monomeric red fluorescent protein for cellular imaging

(2016) Daphne S Bindels et al.   NATURE METHODS

Improving brightness and photostability of green and red fluorescent proteins for live cell imaging and FRET reporting

(2016) Bryce T. Bajar et al.   Scientific Reports

Measuring In Vivo Mitophagy

(2015) Nuo Sun et al.   MOLECULAR CELL

Photoswitchable Red Fluorescent Protein with a Large Stokes Shift

(2014) Kiryl D. Piatkevich et al.   CHEMISTRY & BIOLOGY

Chromophore Transformations in Red Fluorescent Proteins

(2012) Fedor V. Subach et al.   CHEMICAL REVIEWS

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles

(2012) Robert B. Best et al.   Journal of Chemical Theory and Computation

Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA

(2011) Elizabeth J. Denning et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Directed molecular evolution to design advanced red fluorescent proteins

(2011) Fedor V Subach et al.   NATURE METHODS

The ORCA program system

(2011) Frank Neese   Wiley Interdisciplinary Reviews-Computational Molecular Science

A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu

(2010) Stefan Grimme et al.   JOURNAL OF CHEMICAL PHYSICS

Engineering ESPT Pathways Based on Structural Analysis of LSSmKate Red Fluorescent Proteins with Large Stokes Shift

(2010) Kiryl D. Piatkevich et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fluorescent Proteins and Their Applications in Imaging Living Cells and Tissues

(2010) Dmitriy M. Chudakov et al.   PHYSIOLOGICAL REVIEWS

Photoactivatable mCherry for high-resolution two-color fluorescence microscopy

(2009) Fedor V Subach et al.   NATURE METHODS