Distribution of virulence factors, antimicrobial resistance genes and phylogenetic relatedness among Shiga toxin-producing Escherichia coli serogroup O91 from human infections

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

In silico Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data

(2020) Anna Maria Malberg Tetzschner et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Diversity of Hybrid- and Hetero-Pathogenic Escherichia coli and Their Potential Implication in More Severe Diseases

(2020) Ana Carolina de Mello Santos et al.   Frontiers in Cellular and Infection Microbiology

Identification of Novel Plasmids Containing the Tigecycline Resistance Gene tet(X4) in Escherichia coli Isolated from Retail Chicken Meat

(2020) Hong Lv et al.   Foodborne Pathogens and Disease

Host response to the subtilase cytotoxin produced by locus of enterocyte effacement‐negative Shiga‐toxigenic Escherichia coli

(2020) Hiroyasu Tsutsuki et al.   MICROBIOLOGY AND IMMUNOLOGY

Pathogenicity Factors of Genomic Islands in Intestinal and Extraintestinal Escherichia coli

(2020) Mickaël Desvaux et al.   Frontiers in Microbiology

Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages

(2020) Michael Biggel et al.   Nature Communications

The epidemiology of Shiga toxin-producing Escherichia coli infections in the South East of England: November 2013–March 2017 and significance for clinical and public health

(2019) Kevin J. Carroll et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Escherichia coli strains producing a novel Shiga toxin 2 subtype circulate in China

(2019) Xi Yang et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Diverse Fluoroquinolone Resistance Plasmids From Retail Meat E. coli in the United States

(2019) Gregory H. Tyson et al.   Frontiers in Microbiology

Genetic characterization of Shiga toxin producing Escherichia coli belonging to the emerging hybrid pathotype O80:H2 isolated from humans 2010–2017 in Switzerland

(2018) Magdalena Nüesch-Inderbinen et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Serotypes and virulence profiles of Shiga toxin-producing Escherichia coli strains isolated during 2017 from human infections in Switzerland

(2018) Magdalena Nüesch-Inderbinen et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Toxins of Locus of Enterocyte Effacement-Negative Shiga Toxin-Producing Escherichia coli

(2018) Maike Krause et al.   Toxins

High Prevalence of Serine Protease Autotransporter Cytotoxins among Strains of Enteroaggregative Escherichia coli

(2018) Nadia Boisen et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

First report of the distribution of Locus of Adhesion and Autoaggregation (LAA) pathogenicity island in LEE-negative Shiga toxin-producing Escherichia coli isolates from Argentina

(2018) Rocío Colello et al.   MICROBIAL PATHOGENESIS

Antibiotic-resistant Shiga toxin-producing Escherichia coli : An overview of prevalence and intervention strategies

(2018) Raies A. Mir et al.   Zoonoses and Public Health

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Characteristics of Shigatoxin-Producing Escherichia coli Strains Isolated during 2010–2014 from Human Infections in Switzerland

(2017) Lisa Fierz et al.   Frontiers in Microbiology

Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains

(2017) David A. Montero et al.   Scientific Reports

Molecular characterization and phylogeny of Shiga toxin–producing Escherichia coli isolates obtained from two Dutch regions using whole genome sequencing

(2016) M. Ferdous et al.   CLINICAL MICROBIOLOGY AND INFECTION

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition

(2015) Scott A. Beatson et al.   INFECTION AND IMMUNITY

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

(2015) Katrine G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

HlyF Produced by Extraintestinal PathogenicEscherichia coliIs a Virulence Factor That Regulates Outer Membrane Vesicle Biogenesis

(2015) Kazunori Murase et al.   JOURNAL OF INFECTIOUS DISEASES

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Does Sequence Type 33 of Shiga Toxin-Producing Escherichia coli O91 Cause Only Mild Symptoms?

(2014) Eriko Maeda et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Wide World of Ribosomally Encoded Bacterial Peptides

(2014) Rebecca A. Flaherty et al.   PLoS Pathogens

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Shiga Toxin Subtypes Display Dramatic Differences in Potency

(2011) Cynthia A. Fuller et al.   INFECTION AND IMMUNITY

Epidemic Profile of Shiga-Toxin–ProducingEscherichia coliO104:H4 Outbreak in Germany

(2011) Christina Frank et al.   NEW ENGLAND JOURNAL OF MEDICINE

Shiga Toxin, Cytolethal Distending Toxin, and Hemolysin Repertoires in Clinical Escherichia coli O91 Isolates

(2009) M. Bielaszewska et al.   JOURNAL OF CLINICAL MICROBIOLOGY